Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04903 ATGCCGGTCACCGACTACGACATCATGATCGACGTGCTGCCGTCGGGGACGATCAATGACCTTCACGAGATCGCGAAGCCTATAGTGGCCAGAGGGTTCGAGAAGGAGTGCTCTCACGTGTACAATAGTTTTCGAAGGGAGATCTTGGAGAAACTCAACATCGAGTACGTTCACAATATGCCATGGCAGGACCTCGAAGACGAGATCGAAAGATGGATTAAGGCTTCCAATTTCGCTCTCAAGATATTGTTCCCAAGCGAAGGGCGACTATGCGATCACGTCTTCTTCGGATTCTCCCCCATTGTTGATTTCTCCTTCATGGAGGTTTGCAGGGGATCCACCTTCCAGTTGCTGAATTTTACCGATCCCATTGCGATTGGGAGCTTTTCGTCGGAGCGGTTGTTTAGAATCCTCGACCTGTTTGAAAAATTACATGACCTAATTCTCGAGTTTGAGTCTCTGTTTTGTGATCAGTATAGTGTGTCGCTCAGGAATGGAGCAATCACGATTTGGAACAGATTGAACAACGTTAGGCTGTTGATTGGGACCATCATCATCGTCATTGCTCTCTTCGCCCAATTTTACAAGAAGAAGTTCCCTGAGAATAGGGATTTTCTCATTGCCTACATCGCCTTGTATGTAATCTTCAATGATGAAAAATTGAAGGATCTATTTTCTGAGTTTAGAACTATAACATCTTGCAAGGTGATGCTTGATTTACATGGCCATAGCAAGGGTTCTAGATTTGTGGCCTTGGCTTTTTCCACTTCTGAGGAAGCAAATAAAGCCATGAATGAAATTAATGGAAAGTTGATTGGACGGAAGCCTTTGTATGTTGTTGTGGCCCAGAGCAAAGAAGAAAGGAAGGCTTGTTTCCAGGCTCAATTTGCTCAAATCCTAGCACCCGGTGGAATGACACCTTTGCCTGCAGGAATTCCAGGATATCCAGGGGCATCAAGACTTACCCCCTCAACAGTTGTATTTTGGTCAAGGCACACCTGGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCTAGCAACAAAACATTCCTGGAATGCGTCCTGGTGTTGCTCCAAATTTCTGCAAAGGGAATGCAAGTGTTTGAATATGTGCAGAAACTGTTCATTGAAATGTCTCAAAGTGATGTGGTTATTTTCTTATTCTTTTCTCATTATTCCTTTGTTGATTTCATTTTTCTTTTCTTAG 1209 0.4392 MPVTDYDIMIDVLPSGTINDLHEIAKPIVARGFEKECSHVYNSFRREILEKLNIEYVHNMPWQDLEDEIERWIKASNFALKILFPSEGRLCDHVFFGFSPIVDFSFMEVCRGSTFQLLNFTDPIAIGSFSSERLFRILDLFEKLHDLILEFESLFCDQYSVSLRNGAITIWNRLNNVRLLIGTIIIVIALFAQFYKKKFPENRDFLIAYIALYVIFNDEKLKDLFSEFRTITSCKVMLDLHGHSKGSRFVALAFSTSEEANKAMNEINGKLIGRKPLYVVVAQSKEERKACFQAQFAQILAPGGMTPLPAGIPGYPGASRLTPSTVVFWSRHTWLHTTSACWIWFLATKHSWNASWCCSKFLQRECKCLNMCRNCSLKCLKVMWLFSYSFLIIPLLISFFFS. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04903 402 SUPERFAMILY Cullin repeat-like 4 176 IPR016159 -
Seca3g04903 402 Pfam Microsomal signal peptidase 25 kDa subunit (SPC25) 172 217 IPR009582 GO:0005787|GO:0006465|GO:0016020
Seca3g04903 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 277 IPR000504 GO:0003723
Seca3g04903 402 Gene3D Exocyst complex component Exo70 2 181 - -
Seca3g04903 402 SUPERFAMILY RNA-binding domain, RBD 217 290 IPR035979 GO:0003676
Seca3g04903 402 PANTHER EXOCYST COMPLEX PROTEIN EXO70 9 176 IPR004140 GO:0000145|GO:0006887
Seca3g04903 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 284 IPR000504 GO:0003723
Seca3g04903 402 SMART rrm1_1 207 280 IPR000504 GO:0003723
Seca3g04903 402 Gene3D - 212 300 IPR012677 -
Seca3g04903 402 Pfam Exo70 exocyst complex subunit 70 175 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04903 Seca-Chr3 95014068 95015303 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04903 2 177 EXO70 exocyst subunit family AT5G58430 65.405 2.40e-78 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04903 K07195 - qsu:112000433 263.077