LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g04903	ATGCCGGTCACCGACTACGACATCATGATCGACGTGCTGCCGTCGGGGACGATCAATGACCTTCACGAGATCGCGAAGCCTATAGTGGCCAGAGGGTTCGAGAAGGAGTGCTCTCACGTGTACAATAGTTTTCGAAGGGAGATCTTGGAGAAACTCAACATCGAGTACGTTCACAATATGCCATGGCAGGACCTCGAAGACGAGATCGAAAGATGGATTAAGGCTTCCAATTTCGCTCTCAAGATATTGTTCCCAAGCGAAGGGCGACTATGCGATCACGTCTTCTTCGGATTCTCCCCCATTGTTGATTTCTCCTTCATGGAGGTTTGCAGGGGATCCACCTTCCAGTTGCTGAATTTTACCGATCCCATTGCGATTGGGAGCTTTTCGTCGGAGCGGTTGTTTAGAATCCTCGACCTGTTTGAAAAATTACATGACCTAATTCTCGAGTTTGAGTCTCTGTTTTGTGATCAGTATAGTGTGTCGCTCAGGAATGGAGCAATCACGATTTGGAACAGATTGAACAACGTTAGGCTGTTGATTGGGACCATCATCATCGTCATTGCTCTCTTCGCCCAATTTTACAAGAAGAAGTTCCCTGAGAATAGGGATTTTCTCATTGCCTACATCGCCTTGTATGTAATCTTCAATGATGAAAAATTGAAGGATCTATTTTCTGAGTTTAGAACTATAACATCTTGCAAGGTGATGCTTGATTTACATGGCCATAGCAAGGGTTCTAGATTTGTGGCCTTGGCTTTTTCCACTTCTGAGGAAGCAAATAAAGCCATGAATGAAATTAATGGAAAGTTGATTGGACGGAAGCCTTTGTATGTTGTTGTGGCCCAGAGCAAAGAAGAAAGGAAGGCTTGTTTCCAGGCTCAATTTGCTCAAATCCTAGCACCCGGTGGAATGACACCTTTGCCTGCAGGAATTCCAGGATATCCAGGGGCATCAAGACTTACCCCCTCAACAGTTGTATTTTGGTCAAGGCACACCTGGCTTCATACCACCTCAGCCTGCTGGATTTGGTTTCTAGCAACAAAACATTCCTGGAATGCGTCCTGGTGTTGCTCCAAATTTCTGCAAAGGGAATGCAAGTGTTTGAATATGTGCAGAAACTGTTCATTGAAATGTCTCAAAGTGATGTGGTTATTTTCTTATTCTTTTCTCATTATTCCTTTGTTGATTTCATTTTTCTTTTCTTAG	1209	0.4392	MPVTDYDIMIDVLPSGTINDLHEIAKPIVARGFEKECSHVYNSFRREILEKLNIEYVHNMPWQDLEDEIERWIKASNFALKILFPSEGRLCDHVFFGFSPIVDFSFMEVCRGSTFQLLNFTDPIAIGSFSSERLFRILDLFEKLHDLILEFESLFCDQYSVSLRNGAITIWNRLNNVRLLIGTIIIVIALFAQFYKKKFPENRDFLIAYIALYVIFNDEKLKDLFSEFRTITSCKVMLDLHGHSKGSRFVALAFSTSEEANKAMNEINGKLIGRKPLYVVVAQSKEERKACFQAQFAQILAPGGMTPLPAGIPGYPGASRLTPSTVVFWSRHTWLHTTSACWIWFLATKHSWNASWCCSKFLQRECKCLNMCRNCSLKCLKVMWLFSYSFLIIPLLISFFFS.	403

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g04903	402	SUPERFAMILY	Cullin repeat-like	4	176	IPR016159	-
	Seca3g04903	402	Pfam	Microsomal signal peptidase 25 kDa subunit (SPC25)	172	217	IPR009582	GO:0005787\|GO:0006465\|GO:0016020
	Seca3g04903	402	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	217	277	IPR000504	GO:0003723
	Seca3g04903	402	Gene3D	Exocyst complex component Exo70	2	181	-	-
	Seca3g04903	402	SUPERFAMILY	RNA-binding domain, RBD	217	290	IPR035979	GO:0003676
	Seca3g04903	402	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	9	176	IPR004140	GO:0000145\|GO:0006887
	Seca3g04903	402	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	203	284	IPR000504	GO:0003723
	Seca3g04903	402	SMART	rrm1_1	207	280	IPR000504	GO:0003723
	Seca3g04903	402	Gene3D	-	212	300	IPR012677	-
	Seca3g04903	402	Pfam	Exo70 exocyst complex subunit	70	175	IPR046364	GO:0000145\|GO:0005546\|GO:0006887

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g04903	Seca-Chr3	95014068	95015303	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g04903	2	177	EXO70 exocyst subunit family	AT5G58430	65.405	2.40e-78	252

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g04903	K07195		-	qsu:112000433	263.077

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