Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04892 ATGCTAGAAAAGGCTCACTTAAGCGAGAATCAGCGCTCGCTTAAGCAAGAGAACTCTCACTTAAGCGAAATTGGTCCAGAGAATTGGGGTGCTCTCTTGAGTGTTTTCGCTCAAGCAAGAAGGTTCTCGCTTGAGCAAGAACGCGTCAACAAGGCATATTTTCCATTCTCGCTCAAGCGAGAAGAGGAGAAGCTTGAGGAGGAGAGGAAAAGGAAGCTTGGGAGTGTGAAATCAAGGAAGAAGGAGGCTAAGGAAGCTCAAGGAACTCATCTCCAACCATTCAAGATCTCCATTTCCATCTCTTTGAGGTCACCCCCTTCTCCATCACTGGCTAGAGCAACCACCACCATGGCCCAACGCTATCATCCTGGATCCCTATCTCGAACAACCTTACCGCATCTCAGTTTACATCCCGGACAAAATTACATGCAGATCTTCGTGAAAACATTAACCGGGAAGACCATCACCCTTGAGGTGGAAAGTTCAGATACCATTGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAACAAAGGCTCATCTTTGCTGGTAAACAATTGGAGGATGGTCGCACCCTTGCCGATTACAACATCCAAAAGGAGTCAACCCTTCACCTCGTGCTCCGCCTCAGGGGTGGAATGCAAATCTTTGTCAAGACCTTGACTGGGAAAACAATCACTCTTGAGGTTGAATCCTCGGATACCATTGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGGATCCCACCTGATCAGCAGAGGTTGATTTTTGCTGGCAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAACATCCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGATTGAGAGGTGGCATGCAAATTTTCGTCAAGACTTTAACAGGAAAGACTATAACTTTGGAGGTGGAATCCTCAGATACCATTGATAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCTCCAGATCAGCAGAGGCTTATCTTTGCTGGGAAGCAGCTTGAAGATGGAAGAACGCTTGCCGATTATAACATTCAGAAGGAGTCCACTCTGCACTTGGTTTTGCGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACTTTAACCGGGAAGACTATTACCTTGGAGGTGGAAAGCTCTGATACAATTGATAATGTGAAAGCAAAGATACAGGACAAGGAGGGTATTCCTCCAGACCAGCAGCGACTGATTTTTGCTGGCAAGCAATTGGAAGATGGCCGTACATTAGCAGACTACAACATTCAGAAGGAATCAACCCTGCATCTTGTCCTTCGCCTTCGCGGTGGTTTTTAA 1344 0.4621 MLEKAHLSENQRSLKQENSHLSEIGPENWGALLSVFAQARRFSLEQERVNKAYFPFSLKREEEKLEEERKRKLGSVKSRKKEAKEAQGTHLQPFKISISISLRSPPSPSLARATTTMAQRYHPGSLSRTTLPHLSLHPGQNYMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04892 447 PRINTS Ubiquitin signature 174 194 IPR019956 -
Seca3g04892 447 PRINTS Ubiquitin signature 195 216 IPR019956 -
Seca3g04892 447 PRINTS Ubiquitin signature 153 173 IPR019956 -
Seca3g04892 447 CDD Ubl_ubiquitin 143 218 - -
Seca3g04892 447 ProSiteProfiles Ubiquitin domain profile. 371 446 IPR000626 GO:0005515
Seca3g04892 447 FunFam Polyubiquitin 3 219 294 - -
Seca3g04892 447 SUPERFAMILY Ubiquitin-like 137 218 IPR029071 -
Seca3g04892 447 ProSitePatterns Ubiquitin domain signature. 169 194 IPR019954 -
Seca3g04892 447 CDD Ubl_ubiquitin 295 370 - -
Seca3g04892 447 ProSitePatterns Ubiquitin domain signature. 397 422 IPR019954 -
Seca3g04892 447 ProSiteProfiles Ubiquitin domain profile. 143 218 IPR000626 GO:0005515
Seca3g04892 447 ProSiteProfiles Ubiquitin domain profile. 295 370 IPR000626 GO:0005515
Seca3g04892 447 ProSiteProfiles Ubiquitin domain profile. 219 294 IPR000626 GO:0005515
Seca3g04892 447 FunFam Polyubiquitin 3 371 446 - -
Seca3g04892 447 FunFam Polyubiquitin 3 295 370 - -
Seca3g04892 447 PANTHER UBIQUITIN 219 298 - -
Seca3g04892 447 ProSitePatterns Ubiquitin domain signature. 245 270 IPR019954 -
Seca3g04892 447 Pfam Ubiquitin family 221 292 IPR000626 GO:0005515
Seca3g04892 447 Pfam Ubiquitin family 373 444 IPR000626 GO:0005515
Seca3g04892 447 Pfam Ubiquitin family 297 368 IPR000626 GO:0005515
Seca3g04892 447 Pfam Ubiquitin family 145 216 IPR000626 GO:0005515
Seca3g04892 447 Gene3D - 295 371 - -
Seca3g04892 447 Gene3D - 219 294 - -
Seca3g04892 447 Gene3D - 136 218 - -
Seca3g04892 447 Gene3D - 372 447 - -
Seca3g04892 447 SMART ubq_7 219 290 IPR000626 GO:0005515
Seca3g04892 447 SMART ubq_7 295 366 IPR000626 GO:0005515
Seca3g04892 447 SMART ubq_7 371 442 IPR000626 GO:0005515
Seca3g04892 447 SMART ubq_7 143 214 IPR000626 GO:0005515
Seca3g04892 447 SUPERFAMILY Ubiquitin-like 370 446 IPR029071 -
Seca3g04892 447 CDD Ubl_ubiquitin 219 294 - -
Seca3g04892 447 SUPERFAMILY Ubiquitin-like 217 294 IPR029071 -
Seca3g04892 447 MobiDBLite consensus disorder prediction 67 88 - -
Seca3g04892 447 FunFam Polyubiquitin 3 143 218 - -
Seca3g04892 447 SUPERFAMILY Ubiquitin-like 294 370 IPR029071 -
Seca3g04892 447 CDD Ubl_ubiquitin 371 446 - -
Seca3g04892 447 ProSitePatterns Ubiquitin domain signature. 321 346 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04892 Seca-Chr3 94792302 94798855 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04892 371 447 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 2.95e-47 157