Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04891 ATGGCTTGCAACAGCATCCAAAGCAGTTCTTCTTCTTCATCTCAGATGATATGGAAATATGATGTGTTTGTGAGCTTCAGAGGTGAAGACACACGAAATAACTTCACTGATCATCTCTTTGGTGCTCTTCGTAGAAAAGGCGTTGTTGCCTTCAAGGATGACACAAAGCTCAAGAAAGGTGAACCTATAGCACCTGAGCTACTTCAAGCAATTGAAAGGTCTCAAATTTTGATTGTGGTATTCTCAAAGAACTATGCTTCCTCAACATGGTGCATGCGAGAACTGGTAAAGATTCTCGATTGCATTCAAGAATCTGGAAAACATGTTCTGCCTATTTTCTATGATGTGGATCCATCTGAAGTGCGCAAACAGAGCGGAGATTATGAGAAAGCCTTTGCCGAGCATGAAGAAAGATTCAAAGAGGATTTAGAGAAGATGGAGAGAAGCTTTAACACAAGTTGCCAATCTCTCTGGTTGGGATGTACGGGACAAGTTTTTACTTATGATAATTTGATTTTCTTTAAACTTTCAGGCCACAATCATCCGGTTGGGATGCGGTCTTCAATAGAAGAGTTAGAAAAGCTTTTACTTTTGGACTCACCCAATGATGTTCGAGTGGTAGGAATTTGTGGGATGGGTGGAATAGGAAAGTCAACTCTTGCAACTGTTGTATGTCACAAAATTTGTCGTCAATTTGAAGCTTCCTGTTTTATTGATGTTAGCGAAACTTATAGACTTTTTGGTCCAATTGGTGCCCAAAAGCAACTTCTATGTCAAACTCTAAATGAAGAAAACCTTCATATATGCAATCATTATGGGGCAGCTAATTTGATACGAAGTAGGCTATGCCATTTAAGGGCACTTATAGTTCTTGATAATGTTGATCAAGTTGAACAGTTGGAGAAATTAGCTGTGAATCGACAATGGTTAGGTGCAGGAAGTCGAATCATCATAATTTCCAGAGATGAGCATGTTTTGAAAGAATATGGAGTGGATGTAGTTTACAATGTTAAACTCTTGAATGAATATAATGCTCTTAGATTGTTTTCTATTAAAGTATTGGGCTCATTTTTGTACGATCGAGATATCTCTGAGTGGAGAAGTGCATTGGCAAGACTGAGAGAAAATCCAAGCAAAGATGTCATGGATGTGTTGCGAGTAAGTTTTGATGGATTAGAGGAAATGGAAAAAGAAATATTTCTAGATATTGCTTGTTTGTCCAATGAGTCCGGTGGGATATATATTGCGGCAGATAAGTTAAATTATCATGGTTTTGATCCAACAATCGGTATAAGAGTTCTCATTGATAAATCACTCATAACACGTGAGAAGGGAAGGGGGATTTGTATGCATAACTTGTTGAAAGAATTGGGTAGGAGTATTGTTCGAGGAAAATCACCCAAAGAACCGAGAAAATGGAGTAGGTTATGGGACTTGAAGGATCTCCACAATGTTATGTTAGAAAACAAGGAAGCAGAAAATCTTGAGGCCATAGCCGTGGCAATTATAAATCCACGCGAGAATCCAGAAACAACAATGAGGGCTGATGCTATATCAAAAATGAGTCACCTTAAGTTGCTGGAACTTTGGAATATTAAATTTTCAGGAAACCTCAATCATCTTTCCCATGAATTAGTATATCTTATTTGGCATAAATATCCTTTCCAATGCTTGCCATCAAGTTTTCAACCAGATAAACTTGTTGAATTGCTCTTGCCCTGCAGCAGCATCAAACAACTATGGGAAGGCTCTAAGCTTCTACCCAATTTGAGAAATGTGGTTGTCTCTCACTCGAAAAATCTTATTAAGCTGCCAGATTTCAGGGAGTTCCCAAATCTTGAGATACTCCATCTTGAAGGATGTATTAGCCTTGTGTATGTTGATCCATCCATTGGTTTTCTTAAAAATCTTGTTGTTTTGAATTTGAAAGATTGTAAGAATTTAGTCCGTATTCCCGACAACATTTTTGGTCTTAGTTCTCTTAAAAGACTGAATCTCTCTGGGTGCCCAAAATTACTTAACAATTGGGTGATAGAGAAACTGAGGCATTTAGAGAAGCAAGAAATAAATGAAAGTACTATGCAATGGCAGTCAACATCCTCCATCTACAAATTTCTGAAGTTGCCTTTTCATATTTTCAATTCTCCAAGACATGAAGATTCAGTTGGTTTATTATTACCTTCTTTGCCTCGTTTCCAATGTTTGAGTGATCTTGACTTAAGCTTCTGCAATCTACTTCAAATCCCTGATGTTATAGGGTGGTTACATTCTTTAGAATACTTAAATTTGGGGGGAAACAATTTTGTTACACTACCTTCTAGCATTAAGGAACTTTCCAACCTTCATAGATTGAACTTGGAACACTGTAAGAAGTTGAAATATATGCCTGAGCTCTCGTCAACAATTACCTTGCCAAAAAGAAGCAGAGAATGCTTTGGTGCAGGATTGTATATTTTCGACTGCCCCAAATTGTGTGTGATGGAGTGCTGTTATAGCATGGCATTTTATTGGATTATACAACTCCTTGAGGTGTACATGCAATGTTATGGCAAGATTGATATCGTTATTCCCGGAAGTCAAATTCCGAGGAGGTTCAACAAACAAAATGTGGGTAGTTCAATAAGCATAGATCCTTCTCCCATTATGTGCGACAAGAATTGGATAGGTGTTGCTTGTTGTGTTGCATTTGTGGCACATGATGATCCCACTAATTTGGATGATTCGAGAATAATTGGAGATCTTTGTCAAGGTTTTCGATGTAAAAAGCGTGGGAGCTCTCTATTTCTTATTCCAATTCATTTGGAGAAAAATCTTGTCACGGTTGAATTAGATCACTTGTTACTATGTTTTTACACTCGAGAAACCTTCCATTCTTATTATAGCAGGTCTATAATACAAGGAACACACGATCCTGATGCCATCAAATTGGAAACTTTATGTGAGCATCCCAAAGGTTTGCATTTGGAGGTGAAAATGTGTGGGTATTGTTGGGTATTTAAGGAGGATTTGGAACAATCAAAAACAGAAATGATGTATAGCAAAAATTTATCAGTCCAAAAGCACAAGTTTTTAACAAATGGTCTGGCAGATATCATCGAGCTAAATAACATAAAACCTTAG 3120 0.3753 MACNSIQSSSSSSSQMIWKYDVFVSFRGEDTRNNFTDHLFGALRRKGVVAFKDDTKLKKGEPIAPELLQAIERSQILIVVFSKNYASSTWCMRELVKILDCIQESGKHVLPIFYDVDPSEVRKQSGDYEKAFAEHEERFKEDLEKMERSFNTSCQSLWLGCTGQVFTYDNLIFFKLSGHNHPVGMRSSIEELEKLLLLDSPNDVRVVGICGMGGIGKSTLATVVCHKICRQFEASCFIDVSETYRLFGPIGAQKQLLCQTLNEENLHICNHYGAANLIRSRLCHLRALIVLDNVDQVEQLEKLAVNRQWLGAGSRIIIISRDEHVLKEYGVDVVYNVKLLNEYNALRLFSIKVLGSFLYDRDISEWRSALARLRENPSKDVMDVLRVSFDGLEEMEKEIFLDIACLSNESGGIYIAADKLNYHGFDPTIGIRVLIDKSLITREKGRGICMHNLLKELGRSIVRGKSPKEPRKWSRLWDLKDLHNVMLENKEAENLEAIAVAIINPRENPETTMRADAISKMSHLKLLELWNIKFSGNLNHLSHELVYLIWHKYPFQCLPSSFQPDKLVELLLPCSSIKQLWEGSKLLPNLRNVVVSHSKNLIKLPDFREFPNLEILHLEGCISLVYVDPSIGFLKNLVVLNLKDCKNLVRIPDNIFGLSSLKRLNLSGCPKLLNNWVIEKLRHLEKQEINESTMQWQSTSSIYKFLKLPFHIFNSPRHEDSVGLLLPSLPRFQCLSDLDLSFCNLLQIPDVIGWLHSLEYLNLGGNNFVTLPSSIKELSNLHRLNLEHCKKLKYMPELSSTITLPKRSRECFGAGLYIFDCPKLCVMECCYSMAFYWIIQLLEVYMQCYGKIDIVIPGSQIPRRFNKQNVGSSISIDPSPIMCDKNWIGVACCVAFVAHDDPTNLDDSRIIGDLCQGFRCKKRGSSLFLIPIHLEKNLVTVELDHLLLCFYTRETFHSYYSRSIIQGTHDPDAIKLETLCEHPKGLHLEVKMCGYCWVFKEDLEQSKTEMMYSKNLSVQKHKFLTNGLADIIELNNIKP. 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04891 1039 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 157 - -
Seca3g04891 1039 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 673 IPR044974 GO:0006952
Seca3g04891 1039 Pfam TIR domain 19 142 IPR000157 GO:0007165
Seca3g04891 1039 SUPERFAMILY "Winged helix" DNA-binding domain 380 485 IPR036390 -
Seca3g04891 1039 Pfam C-JID domain 856 1004 IPR045344 -
Seca3g04891 1039 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 139 IPR035897 -
Seca3g04891 1039 Gene3D Ribonuclease Inhibitor 717 832 IPR032675 -
Seca3g04891 1039 Gene3D Ribonuclease Inhibitor 475 703 IPR032675 -
Seca3g04891 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 403 IPR027417 -
Seca3g04891 1039 Pfam NB-ARC domain 189 354 IPR002182 GO:0043531
Seca3g04891 1039 Gene3D - 168 334 IPR027417 -
Seca3g04891 1039 Gene3D - 14 157 IPR035897 -
Seca3g04891 1039 SMART till_3 19 156 IPR000157 GO:0007165
Seca3g04891 1039 ProSiteProfiles TIR domain profile. 18 180 IPR000157 GO:0007165
Seca3g04891 1039 PRINTS Disease resistance protein signature 632 648 - -
Seca3g04891 1039 PRINTS Disease resistance protein signature 206 221 - -
Seca3g04891 1039 PRINTS Disease resistance protein signature 281 295 - -
Seca3g04891 1039 SUPERFAMILY L domain-like 464 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04891 Seca-Chr3 94783322 94788991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04891 20 808 WRKY Transcription Factor Family AT4G12020 29.349 3.98e-70 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04891 - - psat:127106907 1081.63