Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04888 ATGAGCCGAAACATGAACAATTTCACACCTCTGCCAGGGCTTTGGAGGACTGGTGTTAGAGCCTATGATGCTCACACTTCCAATAATAGTGAATCCAATGAAGTGCCTGTGTTTTACCGACCTCGTTCTACCAGGGCCACACAGGATGAGAGGAGTTCAGGTGTGCTAGATTCACTGCAGTTCTGGGATGTCAGAACTCCTACAGGACACCACAGTATACCAAATTTTCCAGCACAACAACCACATAGCAGACAACAACAAACTTATGTTCACAATGGGGACATGGGAAGAGGCTTCAACCCCAGGTTCAGAGACATTTTCCTGCAGCCACCCTTAAGATCAACACATCAAACAAGCACACAAGTTCCCCCAGTGGTAGAAAATTCCAAATCAACTGTTTTGAGCAAGCTTAGGAAACAAGTCTATAACCCCACCCCAAAGAGGTTAGTTAGGAAATTGAGCTTATATTATAGAGATAATGCTGTAAAAGATGTGAAAGAGAGGGTGAAAGAAAAGGATGAAGATGGTAAGAGGTGTGCTATTTGCTTGGAAGATTTTGAGCCCAAAGAAGAGGTGATGCTCACACCATGCAACCACATGTTTCATGAGGATTGTATAGTACCTTGGTTAACAAGTAAAGGTCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGAAAGTTAGGGGGAACTCTTCATCCTTCAACAGGAATGATATTGCCAATTTGGAACCTAGTGACCTGATTGCTGGAGAGCTTTTGTCAATTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGCAGAATAACCTACTAA 813 0.4317 MSRNMNNFTPLPGLWRTGVRAYDAHTSNNSESNEVPVFYRPRSTRATQDERSSGVLDSLQFWDVRTPTGHHSIPNFPAQQPHSRQQQTYVHNGDMGRGFNPRFRDIFLQPPLRSTHQTSTQVPPVVENSKSTVLSKLRKQVYNPTPKRLVRKLSLYYRDNAVKDVKERVKEKDEDGKRCAICLEDFEPKEEVMLTPCNHMFHEDCIVPWLTSKGQCPVCRFVICEKVRGNSSSFNRNDIANLEPSDLIAGELLSILRAMEEAFQLGRITY. 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04888 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 234 IPR013083 -
Seca3g04888 270 SMART ring_2 179 219 IPR001841 -
Seca3g04888 270 CDD RING-H2_SIS3 177 223 - -
Seca3g04888 270 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 53 221 - -
Seca3g04888 270 SUPERFAMILY RING/U-box 170 227 - -
Seca3g04888 270 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Seca3g04888 270 SMART ringv_2 178 220 IPR011016 GO:0008270
Seca3g04888 270 FunFam RING/U-box superfamily protein 163 237 - -
Seca3g04888 270 Pfam Ring finger domain 178 220 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04888 Seca-Chr3 94754130 94756240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04888 128 266 C3H Transcription Factor Family AT3G58720 52.414 9.62e-46 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04888 - - gmx:100802085 375.17