Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04878 ATGATGTCAAGATCGTATACTAACCTTTTAGATTTGGCTTCTGGGAATTTCCCGGCAATGGGGAGGGAGTCTAAGGAAAGAAGGCGGATGCCAAGGGTTATGAGTGTACCTGGGTTTGTCACAGAGCTGGATGATGACCAGGCAGTTAGTGTTTCTTCTGATAATCCGTCAACAATTTCCACAGATCGAATGATCATTGTGGCAAACCAGCTACCTTTAAAAGCAAAACGAAGAGAGGACAACAAAGGGTGGAGTTTCAGTTGGAATGAGGATTCCTTGCTTTTACAGCTTAAGGATGGATTTCCGGAAGATATGGAGGTTCTTTATGTTGGATCTTTGCGTGTTGACATTGATCCGGCTGAACAGGATGACGTATCACAGTATTTATTGGAAAAGTTTAAGTGTGTCCCTACTTTTTTGCCCCCTGATGTTTTGGCAAAATTTTATGATGGCTTCTGTAAAAGGCAGTTATGGCCACTTTTTCATTACATGTTACCCTTTTCAACAGATAAAAGCCACCGTTTTGATCGCACTTTGTGGGAAGCCTATGTGCTGGCAAATAAACTATTCTTTCAAAAGGTAGTTGAAATAATAAACCCAGAGGATGATTATATTTGGGTTCATGATTATCATTTGATGGTGCTGCCGACATTTATAAGAAGGCGTTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGCCCCTTTCCGTCATCAGAGATATATAGGACTCTTCCTGTGAGGGAAGAGATACTGAAAGCTTTACTAAACTCTGATATCATTGGATTCCATACCTTTGACTATGCCCGTCATTTCCTTTCCTGTTGCAGTCGAATGTTGGGTCTTGAGTATCAGTCAAAGAGGGGCTATCTAGGATTGGAATATTATGGAAGGACTATCAGTATTAAGATCATGCCTGTTGGGATTCACATGGGTCGTATTGAATCAGTTATGAGAACAGCGGATGAGGAGTGTAAGGTAAGGGAGCTCAAACAGCAATTCGAAGGAAAAACCATCTTGCTTGGTGTTGATGATACGGACATTTTTAAAGGCATAAATCTGAAAATTTTGGCGATGGAGCAGATGCTCAGACAACACCCCAAATGGCAAGGAAGAGCTGTTCTGGTCCAGATAGTAAATCCTGCTAGAGGTAAAGGGATACATCTAGAGGAGATACGTGCTGAAATACAAGAAAGCTGCAGCAGGATCAACAGAGTGTTTGGACGACCTGGTTATGAACCTATTGTTTTTATTGATAGATCAGTTCCATTTACTGAAAAAGTTGCCTATTACAGCATTGCTGAGTGTGTTATTGTCACAGCTGTAAGGGATGGGATGAACCTAACTCCTTATGAATATATTGCTTGTCGACAAGGAATATCTGGTTCTGAATCATGTTCCAATGTCAGTGACCCAAAAAAGAGCATGCTAGTAATATCAGAATTCATTGGCTGTTCTCCATCTCTTAGTGGGGCTATCCGTGTCAATCCATGGAATGTTGAAGCAACCGCAGAGGCAATGAATGAGGCCATCTCAATGGGTGATGGAGAGAAACAGTTGCGGCATGAAAAGCATTACCGGTATGTCAGCACTCATAATGTGGCTTACTGGTCACGCAGTTTCTTGCAAGACATGGAGAGGGCTTGCACAGACCTTCTTAGGAAAAGATGTTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAACTTTAAAAAGCTCTCAATTGATGCTATGGTTTCAGCTTACAAGAGGGCAAAGAGTAGGGCCATTTTATTGGACTATGATGGTACTGTGATGCCACAGAACTCCATTAATAAGAGTCCAAGCAAGGAGGTCATCTCTATTTTAAAAACACTCTGTGCAGACTCCAGAAATGTAGTTTTCATTGTTAGTGGACGGGGGAGGAATAGCTTAAGTGAATGGTTTATTCCCTGCAAAAAACTTGGAATTGCTGCAGAACATGGGTACTTCATAAGGTCTGATCTCTCTCTTTCTGATATGTCATCCTCTTTTTTTGGCTTAGTATCAGTTGTTCAGATATTACTTTTTGCATGA 2070 0.4126 MMSRSYTNLLDLASGNFPAMGRESKERRRMPRVMSVPGFVTELDDDQAVSVSSDNPSTISTDRMIIVANQLPLKAKRREDNKGWSFSWNEDSLLLQLKDGFPEDMEVLYVGSLRVDIDPAEQDDVSQYLLEKFKCVPTFLPPDVLAKFYDGFCKRQLWPLFHYMLPFSTDKSHRFDRTLWEAYVLANKLFFQKVVEIINPEDDYIWVHDYHLMVLPTFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTISIKIMPVGIHMGRIESVMRTADEECKVRELKQQFEGKTILLGVDDTDIFKGINLKILAMEQMLRQHPKWQGRAVLVQIVNPARGKGIHLEEIRAEIQESCSRINRVFGRPGYEPIVFIDRSVPFTEKVAYYSIAECVIVTAVRDGMNLTPYEYIACRQGISGSESCSNVSDPKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMGDGEKQLRHEKHYRYVSTHNVAYWSRSFLQDMERACTDLLRKRCWGIGLSFGFRVVALDPNFKKLSIDAMVSAYKRAKSRAILLDYDGTVMPQNSINKSPSKEVISILKTLCADSRNVVFIVSGRGRNSLSEWFIPCKKLGIAAEHGYFIRSDLSLSDMSSSFFGLVSVVQILLFA. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04878 689 FunFam Alpha,alpha-trehalose-phosphate synthase 317 530 - -
Seca3g04878 689 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Seca3g04878 689 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Seca3g04878 689 Gene3D - 592 670 IPR023214 -
Seca3g04878 689 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 31 665 IPR001830 GO:0003824|GO:0005992
Seca3g04878 689 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 315 - -
Seca3g04878 689 Gene3D Glycogen Phosphorylase B; 56 316 - -
Seca3g04878 689 Pfam Trehalose-phosphatase 596 666 IPR003337 GO:0003824|GO:0005992
Seca3g04878 689 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Seca3g04878 689 Gene3D Glycogen Phosphorylase B; 317 530 - -
Seca3g04878 689 SUPERFAMILY HAD-like 593 666 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04878 Seca-Chr3 94552992 94556003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04878 1 687 Trehalose Biosynthesis Gene Families AT1G06410 76.087 0.0 1099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04878 K16055 - gmx:100800847 1279.23