Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04875 ATGCTTACCACTCTCCCATTTTCCAGATGTATATTAATAGGTGTAGCTAATGCAATTGACCTAGCTGATCGAATTCTTCCAAGGCTTACGTCATTGAATTGCAAGCCTATTGTTGTAAACTTTCAGGCATACTCTAAAGATCAGATCCTTAGGATTCTTGAAGAAAGGCTAAAAGGACTTCCTTACACTGTCTTCCAACATCAAGCGCTGGAACTATGTGCCAGGAAAGTTGCTGCAGCTTCTGGAGACATGCGAAATGCTCTTTGTATATGCAAGAGTGCAATAGAGATGCTAGAAGCGGAAATTAGAGAATCTGCCTCCAACTTGAATACTTCATTGGAAGAAAAATCATCCTCCAAACAAAACGTTGCTACAACTCCTGTTTTTGTAAAAAAGCAAGAATTTGATATCGTAAGGATTAATCATATGGCTCTTGCCTTGTCAAAAACATATAGATCACCGGTGGTGGATACAATACAATCTCTGCCACATCATCAACAGATTATACTCTGCTCTTCTATGAAACATTTCCGTGGAGCCAAGAAAGATGCAATCCTTGGGGAGTTGTATAAATCTTATGTGGAGATGTGCAAATCATCACTAATTCCCCCTGCAGGAATCTTAGAGTTTTCAAACATTTGCAGAGTGCTGAACGATCAGGGGCTTATTAAACTAGGACAATCCCGAGAGGATAAATTGAGAAGAGTGACACCTAAAGTAGATGAGAGTGATATTACTTTTGCATTGTAG 750 0.3933 MLTTLPFSRCILIGVANAIDLADRILPRLTSLNCKPIVVNFQAYSKDQILRILEERLKGLPYTVFQHQALELCARKVAAASGDMRNALCICKSAIEMLEAEIRESASNLNTSLEEKSSSKQNVATTPVFVKKQEFDIVRINHMALALSKTYRSPVVDTIQSLPHHQQIILCSSMKHFRGAKKDAILGELYKSYVEMCKSSLIPPAGILEFSNICRVLNDQGLIKLGQSREDKLRRVTPKVDESDITFAL. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04875 249 Gene3D - 160 245 IPR036388 -
Seca3g04875 249 Coils Coil 95 115 - -
Seca3g04875 249 Pfam AAA lid domain 60 100 IPR041083 -
Seca3g04875 249 CDD Cdc6_C 163 245 IPR015163 -
Seca3g04875 249 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 1 249 - -
Seca3g04875 249 FunFam Cell division control protein 33 159 - -
Seca3g04875 249 Gene3D - 30 159 - -
Seca3g04875 249 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 104 IPR027417 -
Seca3g04875 249 FunFam Cell division control protein 162 249 - -
Seca3g04875 249 SUPERFAMILY "Winged helix" DNA-binding domain 155 249 IPR036390 -
Seca3g04875 249 SMART Cdc6_C_2 170 249 IPR015163 -
Seca3g04875 249 Pfam CDC6, C terminal winged helix domain 170 248 IPR015163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04875 Seca-Chr3 94537016 94540481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04875 1 249 Core DNA Replication Machinery Family AT2G29680 63.855 8.69e-109 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04875 K02213 - gmx:100791200 429.869