Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04868 ATGAAAGCCACTAGTGATGTTGATGATGCCACTCCAATTCATGGGAGTGGAAATATAAAGGTCATGACCAACCATTCTATGTGTCGTTCAGGCCCTCCTTTGACAGCCATAGACAGGTTCTTATGGGGCCAACAAAGCCATACAAATACAAGTGTTTTTGACAATCAATTCTCAACTTTTGCTTGTTCTGGTGCTTCAACTACATGTAGCTTTCTGTGGCCTAATAACACTCAAGAATCAAGTAAGTTTATTGATCAACTCTTAGCAAATGAAGAGTCCCTGAATTGGACACACTACCATATCCTCCCCACATTGTGCCAGCAGAAAGAAGAGATGCAAGTTTTAGGGAAGAGTAGTGTGAAGGTGGGAAGAAGGCCTAAGAAAGGATCTTCTGTGTCTTTGATCAAAGGACAATGGACTGAAGAAGAAGACAGGAAACTGTTGAAGTTGGTGAAGCAACATGGTGTAAGGAAATGGTCTCAAATAGCTGACAAGTTGGATGGAAGAGCTGGCAAGCAGTGTCGAGAGAGATGGAACAATCATCTGCGGCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAAAGGATATTAGTAGAAATGCATGCCAAGATGGGAAATCGTTGGGCAGAGATTGTAAAGCGGATTCCAGGAAGGACAGAGAATGCTATAAAGAACCATTGGAATGCCACAAAGAGGAGGCTTAATTCAAAGAGAAAGAACAAAAAGACAGCAAGCTCCAATGGAAAGCCACAATCCTCTATCCTTCAAAACTATATCAGAAGCAAGACTCAAACTAGCTCCACAACAGCAATCTCTGACTCTGACCCTGCTGCAACAGAACAATCCCACCTTCAGCTCTCTGATTCTGTTACCAATGACAATTTCTCTTCACCACTAATAGTTGATCACCCATATGATGATGATGATGATGAGTTAGTCTTCATGCAACAACTTTTCAAGGACAATCAGACCCAACAACAACCACTTGTCACTGATCAGAATGGGTTTATTCATTCCAATGCTAAGCCAAACTCATATAACAATGTGTACTTGGATGAGAGTCTTATTCTTAAAAAGACTCCTCCCACCCCCACCATCAATTCTGATCATGTCTATCGTTCTCACTTGCTGAATGGAACTGCCACTTCATCACTTTGCTGTAATTATGGGATTCAGTACCAGAACATGGACTTGCAATTGGGGGATCAAAATTCTTCAGAAGGAAAGAAAGAGATGGATTTGATAGAGTTGGTTTATTCTGCTCAGTTTTTCCACTAG 1284 0.412 MKATSDVDDATPIHGSGNIKVMTNHSMCRSGPPLTAIDRFLWGQQSHTNTSVFDNQFSTFACSGASTTCSFLWPNNTQESSKFIDQLLANEESLNWTHYHILPTLCQQKEEMQVLGKSSVKVGRRPKKGSSVSLIKGQWTEEEDRKLLKLVKQHGVRKWSQIADKLDGRAGKQCRERWNNHLRPDIKKDSWSEEEERILVEMHAKMGNRWAEIVKRIPGRTENAIKNHWNATKRRLNSKRKNKKTASSNGKPQSSILQNYIRSKTQTSSTTAISDSDPAATEQSHLQLSDSVTNDNFSSPLIVDHPYDDDDDELVFMQQLFKDNQTQQQPLVTDQNGFIHSNAKPNSYNNVYLDESLILKKTPPTPTINSDHVYRSHLLNGTATSSLCCNYGIQYQNMDLQLGDQNSSEGKKEMDLIELVYSAQFFH. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04868 427 CDD SANT 190 233 IPR001005 -
Seca3g04868 427 ProSiteProfiles Myb-like domain profile. 131 182 IPR001005 -
Seca3g04868 427 SUPERFAMILY Homeodomain-like 133 229 IPR009057 -
Seca3g04868 427 MobiDBLite consensus disorder prediction 224 299 - -
Seca3g04868 427 MobiDBLite consensus disorder prediction 247 299 - -
Seca3g04868 427 FunFam Transcriptional activator Myb isoform A 135 188 - -
Seca3g04868 427 CDD SANT 139 182 IPR001005 -
Seca3g04868 427 Pfam Myb-like DNA-binding domain 139 196 - -
Seca3g04868 427 MobiDBLite consensus disorder prediction 232 246 - -
Seca3g04868 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 186 IPR017930 -
Seca3g04868 427 SMART sant 135 184 IPR001005 -
Seca3g04868 427 SMART sant 187 235 IPR001005 -
Seca3g04868 427 Gene3D - 135 187 - -
Seca3g04868 427 ProSiteProfiles Myb-like domain profile. 183 233 IPR001005 -
Seca3g04868 427 Gene3D - 189 259 - -
Seca3g04868 427 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 187 237 IPR017930 -
Seca3g04868 427 PANTHER MYB PROTEIN-RELATED 111 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04868 Seca-Chr3 94363003 94364826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04868 30 420 MYB Transcription Factor Family AT5G58850 38.263 2.15e-79 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g04868 Myb_DNA-bind_6 3.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04868 K09422 - gmx:100786295 400.979