Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04864 ATGGCCTCCATGCCGTTGGGGCACCACCACCACCAACCGCCACCGCAGACGGCTACGCAACCGCAACAACCGCCGCAGTTTCAGGAAGTTCCTCGCCGGAGCTCCGATATGGAGACAGAAAAGTTGCAGGAAATGTCCGCCACTGTCATTGATAGGAATGATTCAGTCACTGGCCACATAATCTCCACCACAATTGGAGGCAAGAATGGTGAACCTAAAAGGACCATCAGTTACATGGCAGAACGTGTTGTTGGCACTGGATCATTTGGAGTTGTTTTCCAGGCAAAATGCTTAGAGACGGCGGAAGCTGTAGCCATAAAAAAGGTCTTGCAAGACAAGCGGTACAAAAATCGAGAGCTGCAGTTGATGCGCTTGATGGATCACCCAAATGTAATTTCCCTGAAACATTGTTTCTTCTCTACAACAAGCAGAGATGAACTTTTTCTGAACTTGGTAATGGAATATGTCCCTGAGACACTGTATCGAGTTCTAAAGCACTACAATACTATGAACCAGAAGATGCCTCTCATCTATGTGAAACTATATACATATCAAATCTTTAGGGGATTAGCATACATCCATACCGTACCAGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTTCATCCTCTTACTCACCAAGTTAAGCTTTGTGATTTCGGGAGTGCCAAAGTTCTGGTCAAGGGTGAATCAAACATCTCGTACATCTGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCTGAACTTCTTCTAGGCCAGCCATTATTTCCAGGAGAAAATCAGGTGGACCAACTTGTGGAAATTATTAAGGTTCTTGGTACTCCAACTCGAGAAGAAATTCGTTGCATGAACCCGAATTATACAGACTTTAGATTCCCGCAGATAAAAGCTCATCCTTGGCACAAGGTTTTCCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCTAGTCTTCGCTGCACTGCGCTGGAGGCGTGTGCGCATCCTTTCTTTGATGAGCTTCGTGAACCAAATGCCAGACTACCAAATGGCCGTCCACTGCCCCCACTTTTTAACTTCAAACAGGAACAGTTAGCTGGAGCATCACCTGAACTGATCAATAGGCTCATCCCAGAGCACATTAGGCGGCAGACTGGTCTCGGTTTCCCTCAACCGGCTGCTACATAG 1260 0.4603 MASMPLGHHHHQPPPQTATQPQQPPQFQEVPRRSSDMETEKLQEMSATVIDRNDSVTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGVVFQAKCLETAEAVAIKKVLQDKRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETLYRVLKHYNTMNQKMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVHPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPLPPLFNFKQEQLAGASPELINRLIPEHIRRQTGLGFPQPAAT. 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04864 419 Gene3D Transferase(Phosphotransferase) domain 1 158 406 - -
Seca3g04864 419 Gene3D Phosphorylase Kinase; domain 1 63 157 - -
Seca3g04864 419 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 42 408 - -
Seca3g04864 419 FunFam Shaggy-related protein kinase kappa 158 406 - -
Seca3g04864 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Seca3g04864 419 ProSitePatterns Protein kinases ATP-binding region signature. 84 108 IPR017441 GO:0005524
Seca3g04864 419 SUPERFAMILY Protein kinase-like (PK-like) 77 386 IPR011009 -
Seca3g04864 419 MobiDBLite consensus disorder prediction 1 47 - -
Seca3g04864 419 FunFam Glycogen synthase kinase-3 beta 62 157 - -
Seca3g04864 419 SMART serkin_6 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04864 419 Pfam Protein kinase domain 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04864 419 CDD STKc_GSK3 73 365 IPR039192 -
Seca3g04864 419 ProSiteProfiles Protein kinase domain profile. 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04864 Seca-Chr3 94308910 94314405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04864 82 388 MAP Kinase Gene Family AT3G59790 35.404 6.03e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca3g04864 Pkinase 5.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04864 K14502 - gmx:100810924 753.051