Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04858 ATGTCGGGTGCTGGATCTATTTCTCAGGATTGGGAACCCGTCGTTCTCCGCAAGAAAGCACCCACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCGCCGGCGCAGACATCGAAACCGTTAAGAAATATAATGCTGGGACAAACAAAGCTGCCTCGAGCAGCACTTCATTCAACACTAAGAGGCTGGATGACGATACAGAGAATCTAGCTCATGAGCGTGTACCAACTGAACTAAAGAAAGCTATAATGCAAGCTAGGACGGACAAGAAACTTACTCAGGCTCAGCTTGCTCAGTTGATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAATCAGGGAAGGCCATTCCAAACCAGCAGATACTTGGCAAGTTGGAGAGAGCCCTTGGAGCTAAACTGCGTGGCAAGAAATAA 429 0.5035 MSGAGSISQDWEPVVLRKKAPTAAAKKDEKAVNAARRAGADIETVKKYNAGTNKAASSSTSFNTKRLDDDTENLAHERVPTELKKAIMQARTDKKLTQAQLAQLINEKPQVIQEYESGKAIPNQQILGKLERALGAKLRGKK. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04858 142 Coils Coil 87 107 - -
Seca3g04858 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Seca3g04858 142 Gene3D - 71 142 IPR010982 GO:0003677
Seca3g04858 142 SUPERFAMILY lambda repressor-like DNA-binding domains 81 138 IPR010982 GO:0003677
Seca3g04858 142 CDD HTH_XRE 85 135 IPR001387 -
Seca3g04858 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Seca3g04858 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Seca3g04858 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Seca3g04858 142 MobiDBLite consensus disorder prediction 52 71 - -
Seca3g04858 142 SMART mbf_short4 86 141 IPR001387 -
Seca3g04858 142 FunFam Multiprotein bridging factor 1 71 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04858 Seca-Chr3 94192709 94195537 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Seca3g04858 MBF1 3.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04858 K03627 - gmx:100500420 260.766