Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04857 ATGTCGGGTGTTGGATCTGTTTCTCAGGACTGGGAACCTGTCGTCCTCCGCAAGAAAGCACCTACCGCCGCCGCCAAGAAGGACGAGAAAGCCGTCAACGCCGCCCGCCGCGCCGGCGCAGACATCGAAACCGTTAAGAAATATAATGCTGGGACAAACAAAGCTGCCTCTAGCAGCACTTCATTGAACACTAAGAGGCTGGACGACGATACAGAGAATCTAGCTCATGAGCGTGTACCAACTGAACTCAAGAAAGCTATAATGCAAGCTAGGACGGACAAGAAACTTACTCAAGCACAGCTTGCTCAGCAGTTGATCAATGAGAAGCCTCAAGTGATCCAAGAGTACGAATCAGGGAAGGCCATTCCAAACCAGCAGATACTTGGCAAGTTGGAGAGAGCCCTTGGAGCTAAATTGCGTGGCAAGAAATAA 432 0.5046 MSGVGSVSQDWEPVVLRKKAPTAAAKKDEKAVNAARRAGADIETVKKYNAGTNKAASSSTSLNTKRLDDDTENLAHERVPTELKKAIMQARTDKKLTQAQLAQQLINEKPQVIQEYESGKAIPNQQILGKLERALGAKLRGKK. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04857 143 Gene3D - 71 143 IPR010982 GO:0003677
Seca3g04857 143 Pfam Helix-turn-helix 87 138 IPR001387 -
Seca3g04857 143 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 8 143 - -
Seca3g04857 143 CDD HTH_XRE 85 136 IPR001387 -
Seca3g04857 143 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Seca3g04857 143 SUPERFAMILY lambda repressor-like DNA-binding domains 81 139 IPR010982 GO:0003677
Seca3g04857 143 FunFam Multiprotein bridging factor 1 71 143 - -
Seca3g04857 143 ProSiteProfiles Cro/C1-type HTH domain profile. 87 142 IPR001387 -
Seca3g04857 143 SMART mbf_short4 86 142 IPR001387 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04857 Seca-Chr3 94182860 94185706 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Seca3g04857 MBF1 2.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04857 K03627 - gmx:100500420 254.218