Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04851 ATGCCAAGGCTCCGTTGGACTCATGATCTCCATCTAGCTTTCGTGCGTGCTGTTCACAAGCTTGGTGGTCAGGAAAGAGCAACACCCAAGTTAGTACTCCAGTTAATGAATGTGAGGGGACTTAGTATTGCACATGTAAAGAGTCATTTGCAGATGTATCGAAGTAAAAAGCTTGATGGATCTGGCCAAGTTTTGTCCAAACATAGGGCAATGCAAGGAAAACATCAAATTTATGACATGTACCAAAGAGTTAATGCCCAAGGGCACTTTGGGGTTGATAACAAAAATTATCTACCATCATCACATTTGCTAATAAAACAACCATATGGATTCAAAGCTCATGGATCTTCAAGATTTCAGCAGGTTGGGATTTTCGCAAGATCATTATGTGAGGCCCCTAACTATAGAACCTTCCTTCAAAGGAATGAAAGGATTGCAACAACAAGAAATGAACCTATTGCAATACCTTCTCCTTGGAGCGTCAATGCCAGTTCTATAAACAAGCAATATCAACCAAGTTCTTGGGGTACAATCTTCCATGGCCATGCGAAGCTTGGTGCTGAGGTCGAAGATCTAAAAGCTGAAATGCAACAATTCACAAATGAGGTTCAAGTCAAAGCACACTTAGAAAGATTGGAGGAGAACAAAGGGTCAGCAAATTTGCTAGAGCTAAGGTTATTAAGTCACGATTTAGGAAACGTTGGAGAGACAAATAATGGAGGTCTAGAAAGTGAACAAGAAATCAATACAATGCTATCTCTTTCGTTGTAA 771 0.4021 MPRLRWTHDLHLAFVRAVHKLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDGSGQVLSKHRAMQGKHQIYDMYQRVNAQGHFGVDNKNYLPSSHLLIKQPYGFKAHGSSRFQQVGIFARSLCEAPNYRTFLQRNERIATTRNEPIAIPSPWSVNASSINKQYQPSSWGTIFHGHAKLGAEVEDLKAEMQQFTNEVQVKAHLERLEENKGSANLLELRLLSHDLGNVGETNNGGLESEQEINTMLSLSL. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04851 256 NCBIfam myb-like DNA-binding domain, SHAQKYF class 2 57 IPR006447 GO:0003677
Seca3g04851 256 Gene3D - 1 58 - -
Seca3g04851 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 58 IPR017930 -
Seca3g04851 256 Coils Coil 182 202 - -
Seca3g04851 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 148 IPR046955 GO:0003700
Seca3g04851 256 Pfam Myb-like DNA-binding domain 4 54 IPR001005 -
Seca3g04851 256 FunFam Myb family transcription factor 1 58 - -
Seca3g04851 256 SUPERFAMILY Homeodomain-like 2 56 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04851 Seca-Chr3 94101035 94105367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04851 1 70 G2-like Transcription Factor Family AT2G42660 69.333 3.29e-29 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g04851 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04851 - - lang:109337615 260.766