Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04843 ATGCCAGAGAGAAACTTGGTTTCCACACTTTCTTCCAAACTCTCTCTACCGGAAACGCTAACGGCAGAAAAGACGGAGCCATTGCTGGCGGCGGCTGCTTTACAGTCTGGTCCTGATGAGCGGAGTATTCCTGGAAATACCATAGTTGTTGATGTTGACGTGCCTTTTAGTGGCCTGACAACATTTGGAGGTTCATTTTTGTCAAAGTTCCAATGTTCTCAAATGCCGCATCCACTGCTAGATGAGGTAACATTTGTGGACACTCCTGGTGTCCTGTCTGGTGAGAAACAAAGGACTCAACGAAGCTATGATTTCACTGGTGTTGTATCTTGGTTTGCTGCCAAATGTGATCTTATTCTTATGCTATTTGATCCGCATAAACTTGACATCAGTGATGAGTTTAAACATGTAATTGCATCTTTACGCAGTAATGATGACAAGATATGCGTAGTTTTGAATAAGGAGAATACTGGACAAATTAAGATTGGAGATCTTGGATTGGCAATTGTCATACAGCAGCCTACTGCCCGTAGTGTTATAGGTACACCAAAATTCATGGCCCTTGAGCTTTATGAGGAAGAATACAACAAACTTGTTGACATATATTCCTTTGGCATGTGCATCTTGGAAATGATCATTAAGTTTCAGGATGGAGACCTTGTTGTTTTCTCTGAAGTCCCTTTGTATCGTGGCTGGATAGTTGATTCTCAAGATTATGTGCAGGAATTGTTTGCTAAAATGTCTCAAAGGGATGTAGTTAATTTTTGTTCTTTTCTCATTATTCTTTTGATTAGTTTCAATTCCTTTTCTTGGTTTCAAGTTGATATTGGTTAA 834 0.3981 MPERNLVSTLSSKLSLPETLTAEKTEPLLAAAALQSGPDERSIPGNTIVVDVDVPFSGLTTFGGSFLSKFQCSQMPHPLLDEVTFVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILMLFDPHKLDISDEFKHVIASLRSNDDKICVVLNKENTGQIKIGDLGLAIVIQQPTARSVIGTPKFMALELYEEEYNKLVDIYSFGMCILEMIIKFQDGDLVVFSEVPLYRGWIVDSQDYVQELFAKMSQRDVVNFCSFLIILLISFNSFSWFQVDIG. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04843 277 Gene3D - 13 153 IPR027417 -
Seca3g04843 277 Pfam Protein kinase domain 154 214 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04843 277 SUPERFAMILY Protein kinase-like (PK-like) 152 215 IPR011009 -
Seca3g04843 277 Gene3D Transferase(Phosphotransferase) domain 1 154 252 - -
Seca3g04843 277 ProSiteProfiles Protein kinase domain profile. 1 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04843 277 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 155 213 - -
Seca3g04843 277 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 154 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04843 Seca-Chr3 93921725 93922558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04843 36 156 EF-hand Containing Proteins AT3G20290 81.818 6.24e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca3g04843 Pkinase 1.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04843 K12483 - gmx:100805498 228.409