Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04824 ATGTGTCCACAAGCGAGGAGGGTTGATTTCAGCGTGGGTGACAAAGTGGAGGTGTCTATCGACGAAGAAGGGTTTTGGGGTTCTTACTATGAAGGCACTATTGTGTCCCCACTTGATGAGAATGGACGCTACATGGTGCGCTACAAGAACCTTCTCGAAGATGACAGGTCTAAGCCTCTCACAGAGCCTATTCTGCCCAAAGATCTTCGACCCAAGCCACCTCGTGTTCGCGTTGGGGAGTACAAGGTGTATTCCTATGTCAATGCTTTTGCTAACGATGGTTGGTGGTTTGGTAGGATCACTAGGCAAAAGAGCGAATCTCACTACTATGTCTACTTCAAAACCACAAATGAAGAGATTCCCTACCATATCTCTCGTATCAGGGTTCACCAAGAGTGGGCTAATGGGGACTGGATTGCGTTCTAA 426 0.4765 MCPQARRVDFSVGDKVEVSIDEEGFWGSYYEGTIVSPLDENGRYMVRYKNLLEDDRSKPLTEPILPKDLRPKPPRVRVGEYKVYSYVNAFANDGWWFGRITRQKSESHYYVYFKTTNEEIPYHISRIRVHQEWANGDWIAF. 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04824 141 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 139 - -
Seca3g04824 141 SMART agenet_At_2 8 77 IPR014002 -
Seca3g04824 141 SMART agenet_At_2 79 135 IPR014002 -
Seca3g04824 141 Gene3D - 4 59 - -
Seca3g04824 141 Pfam Agenet domain 13 74 IPR008395 -
Seca3g04824 141 CDD Tudor_Agenet_AtDUF_rpt1_3 10 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04824 Seca-Chr3 93615476 93615901 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04824 22 133 PHD Transcription Factor Family AT5G58610 29.851 6.26e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04824 - - gmx:106794115 179.104