Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04807 ATGGAAATGGAAGCATTTAATTGGGGCTCTGGCATTCATGGAGATGCCATTACTGATGATTTTCAAGTAAACAATGCGGTAATTGGAAGTGGGTATGGTTCATCTTTCTCCCTGATTTTGGATAGGGAGAGAGGGGAGCTTGTGGAGGCGCCTTCCAAATTGGAACGAAAGTGTGTGTCCACTGAGAGAACCACTGAAGCTTTGAAGAGCCATAGTGAGGCAGAGAGGAGGAGGAGAGCAAGGATTAATGCACATCTTGATACACTTCGAAGTGTGATTCCAGGTGCTAATAAGCAGATGGATAAAGCATCATTACTTGGTGAGGTTCTTAGTCATTTGAAAGAGCTGAAAAGGAATGCAGCACAAGCTTGTGAAGGTGTAATGATACCAAAGGACAGCGATGAAATAAGTGTTGAAGAACAAGAGGGTGGGTTCAATGGCTTTCCTTATTCAATTAGAGCATCACTATGTTGTGAATATAAACCCGGGTTATTGTCTAATATAAGACAAGCACTAGATGCTCTTCATCTTATGATAATAAAGGCTGATATTGCAACATTGGGAGGCAGAATGAAGAATGTCTTTGTGATAATTAGCTGCAAAGAACAGAACTTTGAAGATGCTGAATACCGTCAGTTTCTTGCTGGCTCTGTTCATCAAGCTCTTAGATCTGTACTCAATAGGTTTTCTGTTTCAGAGGACATCTTAGGAACCAGAAAAAGGAGGAGGATTTCTATATTCAGTTCAACATTTTTAGAAGATATCTTGTAA 771 0.4034 MEMEAFNWGSGIHGDAITDDFQVNNAVIGSGYGSSFSLILDRERGELVEAPSKLERKCVSTERTTEALKSHSEAERRRRARINAHLDTLRSVIPGANKQMDKASLLGEVLSHLKELKRNAAQACEGVMIPKDSDEISVEEQEGGFNGFPYSIRASLCCEYKPGLLSNIRQALDALHLMIIKADIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLNRFSVSEDILGTRKRRRISIFSSTFLEDIL. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04807 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 116 IPR011598 GO:0046983
Seca3g04807 256 Pfam Helix-loop-helix DNA-binding domain 70 116 IPR011598 GO:0046983
Seca3g04807 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 122 IPR036638 GO:0046983
Seca3g04807 256 Gene3D - 61 125 IPR036638 GO:0046983
Seca3g04807 256 PANTHER TRANSCRIPTION FACTOR BHLH30 44 245 IPR045847 GO:0003700|GO:0006355
Seca3g04807 256 SMART finulus 72 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04807 Seca-Chr3 93422446 93424851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04807 39 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.367 7.88e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g04807 HLH 5.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04807 - - gmx:100788819 399.053