Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04805 ATGCCAGAAGAACAGTCAATTATAGGAAAAAGGCAGATATATTATGATAAACGCAGTGGCGAGACATTAATATGCAGTGACAATGATGAGGAACCAACAAAAGATGACAAAGTTAAACATGATTTTTCCAGGGGTGAAGATCGCATTTTGTGGATGGAATTTGAGGAACATGGGTTCACTGAGGAAGTGTTGAATATTGTCTCAAAGTTTGTCAATGGTACCGTTTCAGAAATTCAAGAAAGGTATAAATATCTTAAGGAAAAGAACAAGAGGAGGTTGGACCAGCATTCTAAAGATTCTGGAGAACAGGAATCTCTTATTGGCATATCTTTGGATAAAAGCTTGAATGATGCTTTGGATACTTTTAATAGACTTTTTTGCCTCCAGTGCATTCAAATCTTTGATTGTCCCCTGCATGGCTGTTCAAAACCTATATCTCTTGTAAGGAACATTAGTCTATGTTCTTTTCAATTTAATTCACCTGATTCAATGGAAGTGCAAGTCGATGAGAAGTGCTTCTCAAATTGGAAACCTCTGGAAAAAGATTTATATTTGAAGGGTGTAGAAATATTTGGGAGAAACAGTTGCCTTATAGCACGAAACTTACTTTCTGGCTTGAAGACTTGCATGGAAGTAGCTAGCTACATGTATGCTGCAGAAATATCAATGCCTAACAAATCCATACTAAGTTCAACCGTGGAAAAAAATGGAAAAGTTGATGCAGAGAGCACAATAAGAATTACAAGCATTATATTTTTCTGTGACCGAGAGATGGAATCAGGGTCACGAATGCTACAGAAAAAGCGCAAAACTAGGAAGTTGAAATTTTCTTTCAAGTCTTCTCGCCTCTCATCTACATGGAAAAGAAATACTGCTAGAAAAAGTAAAACTTACAAGCAGTATACACCTTGTGGATGTCAGGGAATGTGTGGAAAGCAATGTTCTTGTCTTCAAAATGGATCCTGCTGTGAAAAATATTGTGGATGTTCAAAGCTATGTGGAAATCGGTTCAGAGGATGTTATTGTGCTAAGAGTCAATGCAAAAGTCGACAATGTCCATGCTTTGCAGCAAACCGAGAATGTGACCCAGATGTCTGTCGAAATTGTTGGGTTAGTTGTGGCGGTGGTTCATTAGGAGAGCCACCTCGACGTGGAGATGGTCAATGTGAAAATATGAGGATTCTTTTAAGGCAAAAGCAGAGAATTATTTTGGCAAAGTCTGATGTTGCAGGATGGGGAGCCTTCTTAAAGTATGTCATTGATGCTTATCGCAAAGGAAACAAGTTGAAATTTGCTAACCACTCAAAAAAACCCAACTGTTATGCAAAGATTATGCTTGTTGGTGGGGATCATCGAGTAGGCATATTTGCCAAGAAACGCATTGAAGCTGGTGAGGAGATTTTCTACGATTATTGCTATAGGCCAGAGCAAGCACCAACGTGGTTTTAA 1449 0.3844 MPEEQSIIGKRQIYYDKRSGETLICSDNDEEPTKDDKVKHDFSRGEDRILWMEFEEHGFTEEVLNIVSKFVNGTVSEIQERYKYLKEKNKRRLDQHSKDSGEQESLIGISLDKSLNDALDTFNRLFCLQCIQIFDCPLHGCSKPISLVRNISLCSFQFNSPDSMEVQVDEKCFSNWKPLEKDLYLKGVEIFGRNSCLIARNLLSGLKTCMEVASYMYAAEISMPNKSILSSTVEKNGKVDAESTIRITSIIFFCDREMESGSRMLQKKRKTRKLKFSFKSSRLSSTWKRNTARKSKTYKQYTPCGCQGMCGKQCSCLQNGSCCEKYCGCSKLCGNRFRGCYCAKSQCKSRQCPCFAANRECDPDVCRNCWVSCGGGSLGEPPRRGDGQCENMRILLRQKQRIILAKSDVAGWGAFLKYVIDAYRKGNKLKFANHSKKPNCYAKIMLVGGDHRVGIFAKKRIEAGEEIFYDYCYRPEQAPTWF. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04805 482 ProSiteProfiles CXC domain profile. 282 386 IPR026489 -
Seca3g04805 482 Pfam SET domain 413 471 IPR001214 GO:0005515
Seca3g04805 482 SMART CXC_2 335 372 IPR033467 -
Seca3g04805 482 ProSiteProfiles SET domain profile. 338 472 IPR001214 GO:0005515
Seca3g04805 482 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 171 417 IPR045318 GO:0006338|GO:0042054
Seca3g04805 482 Gene3D SET domain 418 480 IPR046341 -
Seca3g04805 482 SMART set_7 400 478 IPR001214 GO:0005515
Seca3g04805 482 SMART sant 172 222 IPR001005 -
Seca3g04805 482 SMART sant 38 88 IPR001005 -
Seca3g04805 482 SUPERFAMILY SET domain 296 475 IPR046341 -
Seca3g04805 482 Pfam CXC domain 339 370 IPR041355 -
Seca3g04805 482 Gene3D SET domain 301 417 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04805 Seca-Chr3 93372635 93376301 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g04805 SET 8.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04805 - - cam:101494145 530.02