Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04791 ATGAAGACCAGTGGAGGAGGAGAGATAGTTGAAGTAGATGGAGGGCACATTATTCGACCAATAGGTCGAAAAGATCGCCATAGCAAGGTTTACACTTCAAAAGGTCCTCGTGATCGCAGGGTAAGACTCTCAGCTCACACAGCTATTGAGTTCTATGATGTTCAAGATCGTCTTGGCTATGATCGACCCAGCAAAGCTGTGGATTGGCTCATCAAGAAAGCAAAACCTTCCATTGACCAGCTTGCTGAGCTTCCACCATGGAATCTATCTGCTACAACTCAAATCCCTGAAGAATCAGAAGAATATCAGCAGAATAATGCTGCTGGAGGCTTAACTGGTAATGGCATGCTCATTGGAGAACCATCACAATCTTCAGCAGCTGATTACAATTTTCAGCTCCAAATGCAATTAGGTGATAATAGCAACCAGCAGCAGCAGGGTAATGCCTTTGTTTCACCACATGTTGATCCAACTGACCCTCCTATTGCTTTCTTTCCCACAAACTCTGCTACTTCTTCCTCCATCAATTTTCATACCTGCCCACCTGATATCATCCCCAGACCAGACATTTCCACTGAAAATCTTGGCCTTTCTCTTCACTTGTTCCAAGATCACCCTGGTTTTATTCCTTGGCAATCACACCAACAAGGTGAAACTGAAAACCATGCAGTACCTTCAAATGAACAACAAACCCTTTTTGCTGGCTTAACCCCTGTTGGGTTTGAGAATAATTATCAGAGAATGGTGACTTGGAACAATGAAACAACCACTGATCATGTCAACAAAGTGGGGTTCATGGTAAACCCACCGCCATATCTTGGTTCAGGTTCTTCAGAGTATTCTCCAAGTGGGACCCTTCAGTCCAGTTTTTCACCTTCGTTTCGGTCTTGGGGTGACTTTCCAATGGCTTCCTCAGAGCTTCACAGGTCTCAACCAGTTCACCAAGCTATCTTTGGTAGTAGGTTTCTGTCTCAGGGGTTTGTTGGGTTTGACATTCCAGAAAGAATTCAAGCTGAGGAGCAGAGAGAGAAGAACCATGGAGTTGCTTCCAACAGACCATCTTCTTATTCTCCTACACACAATTGA 1086 0.4429 MKTSGGGEIVEVDGGHIIRPIGRKDRHSKVYTSKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKPSIDQLAELPPWNLSATTQIPEESEEYQQNNAAGGLTGNGMLIGEPSQSSAADYNFQLQMQLGDNSNQQQQGNAFVSPHVDPTDPPIAFFPTNSATSSSINFHTCPPDIIPRPDISTENLGLSLHLFQDHPGFIPWQSHQQGETENHAVPSNEQQTLFAGLTPVGFENNYQRMVTWNNETTTDHVNKVGFMVNPPPYLGSGSSEYSPSGTLQSSFSPSFRSWGDFPMASSELHRSQPVHQAIFGSRFLSQGFVGFDIPERIQAEEQREKNHGVASNRPSSYSPTHN. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04791 361 MobiDBLite consensus disorder prediction 17 37 - -
Seca3g04791 361 MobiDBLite consensus disorder prediction 12 37 - -
Seca3g04791 361 ProSiteProfiles TCP domain profile. 23 81 IPR017887 -
Seca3g04791 361 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 292 IPR005333 GO:0003700
Seca3g04791 361 Pfam TCP family transcription factor 23 123 IPR017887 -
Seca3g04791 361 MobiDBLite consensus disorder prediction 340 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04791 Seca-Chr3 93148979 93150064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04791 5 357 TCP Transcription Factor Family AT3G15030 38.945 2.06e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca3g04791 TCP 3.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04791 - - gmx:100814907 369.392