Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04790 ATGAACAGAAAGATAATGTTCATATATATATCCATGCTTTCCATGTCAATGGTCTCTGTTATTTTCTTCTCCCTTTACCTCTACACAAAGTGTGTCCAGATAAGACGCCAATCTCATCGCAGAGCCGCCATTCGCAGAAGACTCGACCTTGCCCTGCAGCTTTATCAGCAGCACATGGAGGAACCACCCACCATAGGCCTTGACCCTCCAATCATCGCGGCTTTACCCGCCTTCATTGTCGAATCGAAGGTTCGAGAAGATGGTGGTGGTGGTGTGATGGATTGTGCTGTTTGCTTGAGTGCTTTAGAAGATGAAGAAATGGCCAAGTTGCTTCCTAACTGCAAGCATTATTTCCATGTTGCTTGTATAGATACTTGGTTGGCTTTGCATTGCACGTGCCCCTTGTGTCGAACCGCGGTCCAACCACGGCTTGAGCCGCACCTCCGTGAGGGTCCCACTGCACTGGCTCTTGATGTTGCACCCTTGGAATCGGTGGTTCTGGAAGAAACTAATTCTGATGGTGATCATGGTGGTGTTGGTGAGTCGCCCAGAATTGATGGTGATGGTTCGAATTCAAGGTTGGGTTCGTTCAGAAGGGTTCTCAGTAGGGATAGATCGTCAAGAAGAATAGCCCAAGTCCAACCGTCTGATGTTCATCAAGATTTGGAGCGACAGACAGTGAATTTGTAG 690 0.4797 MNRKIMFIYISMLSMSMVSVIFFSLYLYTKCVQIRRQSHRRAAIRRRLDLALQLYQQHMEEPPTIGLDPPIIAALPAFIVESKVREDGGGGVMDCAVCLSALEDEEMAKLLPNCKHYFHVACIDTWLALHCTCPLCRTAVQPRLEPHLREGPTALALDVAPLESVVLEETNSDGDHGGVGESPRIDGDGSNSRLGSFRRVLSRDRSSRRIAQVQPSDVHQDLERQTVNL. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04790 229 SUPERFAMILY RING/U-box 80 143 - -
Seca3g04790 229 CDD RING-H2_EL5-like 94 137 - -
Seca3g04790 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 218 - -
Seca3g04790 229 MobiDBLite consensus disorder prediction 207 229 - -
Seca3g04790 229 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Seca3g04790 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 143 IPR013083 -
Seca3g04790 229 SMART ring_2 95 136 IPR001841 -
Seca3g04790 229 MobiDBLite consensus disorder prediction 206 229 - -
Seca3g04790 229 FunFam E3 ubiquitin-protein ligase ATL6 55 143 - -
Seca3g04790 229 Pfam Ring finger domain 94 137 IPR001841 -
Seca3g04790 229 MobiDBLite consensus disorder prediction 170 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04790 Seca-Chr3 93106320 93107009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04790 1 225 C3H Transcription Factor Family AT2G42360 42.857 7.30e-44 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04790 K19038 - gmx:100783358 199.134