Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04784 ATGGCACAATTGCCACCCAAGATTCCAAACATGACACCAAGTTGGCCTGAGTTTTCATCTCACCAAAAAATTATGCTTTCCCTTAAAAGCATTTCACCAAATGCAGTAACCAACACAAACACAAACCTTTTGAACAACCATCATCAAAACCCTTCATGGGTTGACGAGTTTCTCGACTTCTCATCGGCGAGACGTGGTGCTCACCGCCGGTCAGTGAGTGACTCCATCACTTTCATGGAGGCGCCATCAATGCTGGATGGAAAGGGTAGTGGTCATGGTGGTGGTGGTCACAATGAGTTCGAAAGATTCGATGATGAACAATTCATGTCCATGTTCAATGACGAGGTTTCAGGGAACAACAACCCCATGATGCAACCACCCACGTTGTCTTCCTCCAATCCTTCCACACCTTCTGATCATAACAGCATCAATGATGAGAAGGAAACAAACAGAGAGGAGGAAAAACAAGAGGATCAGCAGCAGCAACATCAGAAGCAATTGAAGCTTGAATCAGATGAGGATGAACAGGAAACTACACGAGTCCACAATGATAGCAATAAGAATGATGATAATAATGCAAATGCAACAACTTGTTCCAATGACAGAATCACAGACCCCAAGAGAGTCAAAAGAATCTTGGCAAATAGGCAATCTGCACAGAGATCAAGAGTGAGGAAGCTGCAATACATATCAGAGCTTGAGAGAAGTGTGACTTCATTACAGGCTGAAGTTTCAGTACTGTCTCCAAGGGTTGCATTTTTGGATCATCAGCGGTTGCTTCTAAATGTTGATAACAGTGCTCTCAAGCAAAGAATCGCCGCCCTGGCTCAAGACAAGATTTTCAAAGATGGTACTAATTGCTTTACGTATTACCTTTTACTAAACTATGCAGCTCATCAAGAGGCATTGAAGAGGGAGATAGAGAGGTTGAGGCAAGTGTATCACCAACAAAGCATCAAGAAGAAGATGGACAGTGCTGCAGGGTCACCATCCCCATCCCCATCTCCATCACCAAAACCACGATGTGATACTCAGACCGAAAAGGAACATCTTATCAATGTTTGA 1065 0.4366 MAQLPPKIPNMTPSWPEFSSHQKIMLSLKSISPNAVTNTNTNLLNNHHQNPSWVDEFLDFSSARRGAHRRSVSDSITFMEAPSMLDGKGSGHGGGGHNEFERFDDEQFMSMFNDEVSGNNNPMMQPPTLSSSNPSTPSDHNSINDEKETNREEEKQEDQQQQHQKQLKLESDEDEQETTRVHNDSNKNDDNNANATTCSNDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDGTNCFTYYLLLNYAAHQEALKREIERLRQVYHQQSIKKKMDSAAGSPSPSPSPSPKPRCDTQTEKEHLINV. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04784 354 Coils Coil 293 320 - -
Seca3g04784 354 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 210 225 IPR004827 GO:0003700|GO:0006355
Seca3g04784 354 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 205 257 IPR004827 GO:0003700|GO:0006355
Seca3g04784 354 FunFam Basic leucine zipper 61 206 279 - -
Seca3g04784 354 MobiDBLite consensus disorder prediction 317 354 - -
Seca3g04784 354 MobiDBLite consensus disorder prediction 141 187 - -
Seca3g04784 354 SUPERFAMILY Leucine zipper domain 207 261 IPR046347 GO:0003700|GO:0006355
Seca3g04784 354 MobiDBLite consensus disorder prediction 113 203 - -
Seca3g04784 354 MobiDBLite consensus disorder prediction 82 101 - -
Seca3g04784 354 SMART brlzneu 203 267 IPR004827 GO:0003700|GO:0006355
Seca3g04784 354 MobiDBLite consensus disorder prediction 113 140 - -
Seca3g04784 354 Gene3D - 206 278 - -
Seca3g04784 354 MobiDBLite consensus disorder prediction 188 202 - -
Seca3g04784 354 PANTHER BASIC LEUCINE ZIPPER 34 1 345 - -
Seca3g04784 354 Coils Coil 143 173 - -
Seca3g04784 354 Pfam bZIP transcription factor 207 251 IPR004827 GO:0003700|GO:0006355
Seca3g04784 354 CDD bZIP_plant_RF2 208 258 IPR044759 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04784 Seca-Chr3 92991882 92994156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04784 1 288 bZIP Transcription Factor Family AT3G58120 55.882 7.30e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g04784 bZIP_2 4.3e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04784 - - lang:109363232 417.157