Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04780 ATGCAAAGAAATAGTAATAACGGGATGCATTCAGCATGCGCTGCATGCAAGCATCAAAGGAAGAAATGCAGTGAAAATTGTATATTAGCACCTTACTTTCCATCAACCAGAAGCCGTGAATTCCATGCTGTACACAAGGTTTTTGGTGTTAGTAACATAACCAAATTGGTGAAAAATGCCAAAGAGGAAGATCGAAGAAGAGTTGTGGATTCATTGATATGGGAAGCATCTTGTAGACAAAGAGATCCTATACATGGACCTTATGGAGAATACACAAAAGTTTACAATGAGTATAAAAAAGTGTTTGATCAACTTAAGATATTCAGAGGCCAAAACCAACTATTGCATTTGCCAGCTCATCAAGGCTTAAAATCTGTAGAAGATTTGATTGCATGCAATGGGACCAAAGGGAAACACCATCAAGAAGAAGGAGCTGATAATGGAATAGATTATCTTCATCATGAGAATAAAAATGGTATTATTGATTCTACCATTTATAATGCCTTTTGTTCAAATTATTTACAAGATTTTGAGAATGTGAGGCAGGAAGTTGTCATCCCATTTCAGCAGAACTCTTACTATATCACAGGTACCAATCTCTAA 603 0.3599 MQRNSNNGMHSACAACKHQRKKCSENCILAPYFPSTRSREFHAVHKVFGVSNITKLVKNAKEEDRRRVVDSLIWEASCRQRDPIHGPYGEYTKVYNEYKKVFDQLKIFRGQNQLLHLPAHQGLKSVEDLIACNGTKGKHHQEEGADNGIDYLHHENKNGIIDSTIYNAFCSNYLQDFENVRQEVVIPFQQNSYYITGTNL. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04780 200 Pfam Lateral organ boundaries (LOB) domain 12 107 IPR004883 -
Seca3g04780 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 119 - -
Seca3g04780 200 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04780 Seca-Chr3 92958947 92959549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04780 10 99 AS2 family AT1G06280 60.000 1.74e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g04780 LOB 4.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04780 - - gmx:100809173 301.597