Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04754 ATGGAATCCCACAACTTAGACGAAGCTGCAAAACTATTTCGATCTCAAACACAAATATGGAATCACATTTTCAGCTTCATAAAATCCTTGTCCCTCAAATGTGCAATTGACTTATGCATACCAGATGTCATACACAAGTATGGCCAACCCATGCCACTCTCACAACTCGTGGCTTCACTTTCAATCCACCCAACCAAAACCAACAAAATCTGTCGCTTGATGCGAATTTTGACCCATTCAGGTTTCTTCTCTCAACAGAATGTCACCGAAAACGAACTAGAGGTAAAGTATGTTCTAACTGATGCATCTAGACTTCTACTTAAGGATCATCCCTTGAGTATGACATCTTTCTTGCAAGTCATGCTTGATCCAAATTTGATTAAGCCATGGTACCAACTTTCTACTTGGTTCAAAAATGAAGATCCTAATCCTACACCATTTCACATAGAGAAAAGAATGAATTTTTGGGATTATGCTAGCCATGAGCCTAAAATTAGTAACTTGTTCAATGATGCCATGGCAAGTGATGCTCGATTGGTTTCCAATGTGGTAATTGAAAAGTGCAAGGGTGTGTTCAATAGATTGGAGTCATTAGTTGATGTTGGTGGAGGCACAGGAGCTATGGCAAAGGCCATTGCGGAATCATTCCCTCAGCTTAATTGCACTGTATTGGATCTTCCACATGTGGTTGCTAGTTTGCATGGAAGTGAGAACTTGAAATTTGTTGGAGGAGACATGTTTAAGGCAATTCCTCCAGCCGATGTCCTCTTGTTGAAGTGGATATTGCATGACTGGAATGATGAAGAATGTGTGAAAATACTGAAGAAATGCAAAGCGGCAATCAGTAACAAAGGCAAAGATGGAAAGGTGATTATCATAGATGTAGTGAGGGATAACAAGAAGGGAGAGGATGAATCATTTGAAACAGAGCTATTCTTTGATATGCTAATGATGGTGCTTGTCACCGGAAAGGAGAGAAATGAGAAACAATGGGCCAAGTTGATTTTTTCCGCTGGTTTCAATCACTACAAGATAACTCCAATTCTGGGTTTAAGGTCTCTCATTGAGGTTTATCCATAG 1080 0.3991 MESHNLDEAAKLFRSQTQIWNHIFSFIKSLSLKCAIDLCIPDVIHKYGQPMPLSQLVASLSIHPTKTNKICRLMRILTHSGFFSQQNVTENELEVKYVLTDASRLLLKDHPLSMTSFLQVMLDPNLIKPWYQLSTWFKNEDPNPTPFHIEKRMNFWDYASHEPKISNLFNDAMASDARLVSNVVIEKCKGVFNRLESLVDVGGGTGAMAKAIAESFPQLNCTVLDLPHVVASLHGSENLKFVGGDMFKAIPPADVLLLKWILHDWNDEECVKILKKCKAAISNKGKDGKVIIIDVVRDNKKGEDESFETELFFDMLMMVLVTGKERNEKQWAKLIFSAGFNHYKITPILGLRSLIEVYP. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04754 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 359 IPR016461 GO:0008168
Seca3g04754 359 PANTHER O-METHYLTRANSFERASE 14 344 IPR016461 GO:0008168
Seca3g04754 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 358 IPR029063 -
Seca3g04754 359 CDD AdoMet_MTases 198 297 - -
Seca3g04754 359 Gene3D - 2 106 IPR036388 -
Seca3g04754 359 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
Seca3g04754 359 Pfam Dimerisation domain 31 78 IPR012967 GO:0046983
Seca3g04754 359 Pfam O-methyltransferase domain 130 341 IPR001077 GO:0008171
Seca3g04754 359 SUPERFAMILY "Winged helix" DNA-binding domain 11 111 IPR036390 -
Seca3g04754 359 Gene3D Vaccinia Virus protein VP39 108 359 IPR029063 -
Seca3g04754 359 PIRSF O-mtase 1 359 IPR016461 GO:0008168
Seca3g04754 359 FunFam O-methyltransferase ZRP4 108 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04754 Seca-Chr3 92448891 92450444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04754 7 345 Monolignol Biosynthesis Gene Families AT5G54160 29.942 7.93e-47 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04754 - K16040 gmx:100781008 533.487