Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04749 ATGTGTGTGGACGCATCTCTCCCTGTACTGGACAAATATGTAGATCATAGAGTGGATTGCATGATGGATGCTGGACTACTCAATGAAGTCTATGACATTTATAATCTTCATGCAGATTATTCTAGAGGTTTGCGGCAGGCCATTGGTGTCCGTGAATTTGAGCTTCTTCTTAGAACTTTTGTTGTCGAAGACATCTCTAAAAGAGAGAAGGAATTAACAGAGGGATCCAGCATAGAGAAGCATGAGACATTCTTCAATGGTAATCTGATGGAGTGGTTGAGGTCTTCCTCTGATACTAAATCCATAATTCTTTTGGAAGAAGCAATAGAAAAAGTAAAACTTAATACCCGAAGACTTGTTCGCCGTCAGAAAAGGATGCTCAGTCGACTGCAAACACTGTTTGGTTGGAACATACACTATGTTGATTCCACGGAATCAATATCAAGCAAATCAGATGATGTATGGAGTGGCCAAGTGGTTGAATCTGCCACGAAGATAGTTAAAACTTTCCTGAGTGAGGATGGAAGCTTGTCCTCCACCTTTGGTATGTCAAATGACACCGGGATGAAAATAAACCAAAGGGATCTCTGGACTCAATACATATGCAAGGCCTGCGGTGATCGGGTGCTTCGAGGATTACATGAATGGGAACAACACAGACGAGGTCGTGGGCACCGAAAACGTATTTCTCGTATCAAGAGCAAGGAACAAGGTCATGGTTTCGTGGAACAAAAGCTGGAGTATTCTGAGTGTGAAACTGCGAATAGTTAG 771 0.4241 MCVDASLPVLDKYVDHRVDCMMDAGLLNEVYDIYNLHADYSRGLRQAIGVREFELLLRTFVVEDISKREKELTEGSSIEKHETFFNGNLMEWLRSSSDTKSIILLEEAIEKVKLNTRRLVRRQKRMLSRLQTLFGWNIHYVDSTESISSKSDDVWSGQVVESATKIVKTFLSEDGSLSSTFGMSNDTGMKINQRDLWTQYICKACGDRVLRGLHEWEQHRRGRGHRKRISRIKSKEQGHGFVEQKLEYSECETANS. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04749 256 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 7 138 - -
Seca3g04749 256 Pfam IPP transferase 6 125 - -
Seca3g04749 256 Gene3D Classic Zinc Finger 195 241 - -
Seca3g04749 256 Gene3D - 1 171 IPR027417 -
Seca3g04749 256 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 2 171 IPR039657 -
Seca3g04749 256 FunFam tRNA dimethylallyltransferase 195 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04749 Seca-Chr3 92368875 92373504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04749 1 236 C2H2 Transcription Factor Family AT2G27760 51.695 5.41e-72 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04749 K00791 - gmx:100792690 374.4