Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04736 ATGAGATGCAGTAAAAGCTGCAGGCTTAGATGGACTAACTATCTTCGCCCAGGCATCAAACGAGGCAATTTCACTGATCATGAAGAAAAAATGATAATCCACCTCCAAGCGCTTTTGGGCAATAGATGGGCTGCTATAGCATCCTATCTTCCACAGAGGACAGACAATGACATAAAAAACTACTGGAACACCCATTTAAAGAAAAAGCTGAAGAAGATGCAAAATGGGAGTGAGGATGGTCATGACAAAGAAGGACACTCTAATTCACAGGCAAAAGGTCAGTGGGAGAGAAGGCTTCAAACAGATATACACATGGCCAAGCAAGCCTTGTGTGAGGCACTGTCACTTGACAAGCCAACCCCAGAGAACAACGCCACAACGCCAAACCAAGCTTCTCCATATGCATCAAGAGCTGAGAACATAGCCCGATTGCTCGAAAACTGGATGAAGAAACCCCCAAATTACTCATCAACTGAGACAAATTCAGGAAATTCCTTCAGCAACAGGGTGACCACAGGATCCAGTTCTAGTGAAGGAACGCAGATCACCATCACATTCACACCATCACTATAA 573 0.445 MRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQNGSEDGHDKEGHSNSQAKGQWERRLQTDIHMAKQALCEALSLDKPTPENNATTPNQASPYASRAENIARLLENWMKKPPNYSSTETNSGNSFSNRVTTGSSSSEGTQITITFTPSL. 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04736 190 MobiDBLite consensus disorder prediction 72 95 - -
Seca3g04736 190 ProSiteProfiles Myb-like domain profile. 16 66 IPR001005 -
Seca3g04736 190 FunFam Transcription factor MYB30 22 80 - -
Seca3g04736 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 70 IPR017930 -
Seca3g04736 190 MobiDBLite consensus disorder prediction 151 190 - -
Seca3g04736 190 SUPERFAMILY Homeodomain-like 2 76 IPR009057 -
Seca3g04736 190 SMART sant 20 68 IPR001005 -
Seca3g04736 190 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 169 - -
Seca3g04736 190 CDD SANT 23 66 IPR001005 -
Seca3g04736 190 MobiDBLite consensus disorder prediction 116 135 - -
Seca3g04736 190 Gene3D - 1 20 - -
Seca3g04736 190 Pfam Myb-like DNA-binding domain 21 66 IPR001005 -
Seca3g04736 190 Gene3D - 22 98 - -
Seca3g04736 190 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04736 Seca-Chr3 92195016 92197505 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04736 2 181 MYB Transcription Factor Family AT3G47600 55.000 7.74e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g04736 Myb_DNA-binding 2.9e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04736 K09422 - gmx:100807020 292.737