Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04720 ATGAGATGCAGTAAAAGCTGCAGGCTTAGATGGACTAACTATCTTTGCCCAGGCATCAAACGAGGCAATTTCACTGATCATGAAGAAAAAATGATAATCCACCTCCAAGCGCTTTTCGGCAAAAGATGGGCTGCTATAACATCCTATCTTCCACAGAGGACAGACAATGACATAAAAAACTACTGGGACACCCATTTAAAGAAAAAGCTGAAGAAGATGCAAAATGGGAGTGAGGATGGTCATGACAAAGAAGGACACTCTAATTCACAGGCAAAGGGTCAGTGGGAGAGAAGGCTTCTAACAGATATTCACATGCCCAAGCAAGCCTTGTGTGAGGCACTGTCCCTTGACAAGCCAACCCCAGAGACTTTACCAACAACGCCAAACCAAGCTTCTCCATATGCATCAAGCGCTGAGAACATAGCCCGATTGCTCGAAAACTGGATGAAGAAATCCAATTTACTCATCAACTGA 474 0.4409 MRCSKSCRLRWTNYLCPGIKRGNFTDHEEKMIIHLQALFGKRWAAITSYLPQRTDNDIKNYWDTHLKKKLKKMQNGSEDGHDKEGHSNSQAKGQWERRLLTDIHMPKQALCEALSLDKPTPETLPTTPNQASPYASSAENIARLLENWMKKSNLLIN. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04720 157 CDD SANT 23 66 IPR001005 -
Seca3g04720 157 ProSiteProfiles Myb-like domain profile. 16 66 IPR001005 -
Seca3g04720 157 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 70 IPR017930 -
Seca3g04720 157 SMART sant 20 68 IPR001005 -
Seca3g04720 157 Pfam Myb-like DNA-binding domain 21 66 IPR001005 -
Seca3g04720 157 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 142 - -
Seca3g04720 157 MobiDBLite consensus disorder prediction 72 92 - -
Seca3g04720 157 SUPERFAMILY Homeodomain-like 2 76 IPR009057 -
Seca3g04720 157 Gene3D - 23 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04720 Seca-Chr3 92096810 92099176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04720 2 152 MYB Transcription Factor Family AT3G47600 57.068 1.50e-65 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g04720 Myb_DNA-binding 7.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04720 K09422 - gmx:100807020 251.136