Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04711 ATGTTAAAACAGATGATGGATGAAGGATCAGAAATCACAAATGGTTTCCCTCAGAACACAACTACTTCTGCATCTACTAACAATCCACCTGTTTTGAAGAGGAAGAGAAACCTTCCAGGAAACCCAGGCATGCTTGTTCTTTCATGGCTTATTCTTCTTCTTCTCTTCTTTTCTTCTTTTCTCTTTATTCATCTCTCTTTAGCTTTAGATCCTGAAGCTGAAGTCATAGCCTTATCACCAAAGACTCTCATGGCAACCAACAGATTCATGTGTGAAACTTGTGGGAAAGGTTTCCAAAGGGATCAAAATCTTCAACTCCATAGACGTGGACATAACCTTCCTTGGAAGCTTAAGCAGAGGACTAGCAAAGAAGTAAGGAAGAGAGTTTATGTCTGTCCAGAAAAGACTTGTGTCCACCATGATCCTTCAAGGGCACTTGGGGACTTAACTGGGATAAAAAAGCACTTTTGCAGAAAACATGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAGACTTGTGGTACCAGAGAATACAAATGTGATTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATCACTCATAGGGCCTTCTGTGATGCCTTGGCAGAAGAAACAGCTAGGGTAAATGCAGCATCAGACATAAGCAACACATTAGGGGGAAACATTGGTTACAACATAATGGGAACACCCCTAGGCCCTAACATAGCTACCCAATTTTCTTCAATTTTCAAGCCAATTTCTAGCACTAAAGAAACAACCACTCAAACATCTAGGGGGTTATCCCTTTGGATGGGTCAAGCATCTCAGGCTCATGAAACAATGACTAATAATAGCAGCAATTTGCATGAGATTCATCAACTTGGCTCTGCCACTACCACAGCAGCAATATATGGTGGGACCCCACTTGTCCAATGCCCAAATCCTCCTCCAAACTCAACTAATTATCAGCTAAATTGGGTGTTTGGAACTAAACTTTCCTCCAATGTCAACAATACTATTCCACTTCCACTAGGAAATATTGTTAAGGATGGTGCAAACCAGCAGACAAGTGTTCCTTCCTTGTATAGCTCTCAACACCAAATATCACATCATCAAACATCTTCAGCAAACATGTCAGCCACAGCTTTGTTGCAGAAAGCTGCTCAAATTGGAGCAACCTCAACTGACCCATCATTCCTTGGGAGCTTAGGTTTGAAATGCAGTAACAATCAAGTGCAAGATGGGAACAAGTTGATTAGTGGCATGTATGGTTCAGGTAATAATTCAGTGCTCATGACAAGTCTTGGGAGATCAGAGGCAGAGAACTCTGCATGTGATGACTTGTCACAAATGCACCCTGCCAAACGCAGACACGTGCAGAGTGAAGAGAGTACTACTACTGCAGGGGGGCAAACAAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGCCACCCTTCATCAATCAACGGATGGATTTGA 1506 0.423 MLKQMMDEGSEITNGFPQNTTTSASTNNPPVLKRKRNLPGNPGMLVLSWLILLLLFFSSFLFIHLSLALDPEAEVIALSPKTLMATNRFMCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASDISNTLGGNIGYNIMGTPLGPNIATQFSSIFKPISSTKETTTQTSRGLSLWMGQASQAHETMTNNSSNLHEIHQLGSATTTAAIYGGTPLVQCPNPPPNSTNYQLNWVFGTKLSSNVNNTIPLPLGNIVKDGANQQTSVPSLYSSQHQISHHQTSSANMSATALLQKAAQIGATSTDPSFLGSLGLKCSNNQVQDGNKLISGMYGSGNNSVLMTSLGRSEAENSACDDLSQMHPAKRRHVQSEESTTTAGGQTRDFLGVGVQTICHPSSINGWI. 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04711 501 MobiDBLite consensus disorder prediction 1 37 - -
Seca3g04711 501 FunFam protein indeterminate-domain 12-like 68 136 - -
Seca3g04711 501 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Seca3g04711 501 Gene3D Classic Zinc Finger 85 112 - -
Seca3g04711 501 Gene3D Classic Zinc Finger 124 213 - -
Seca3g04711 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Seca3g04711 501 SMART c2h2final6 130 160 IPR013087 -
Seca3g04711 501 SMART c2h2final6 165 185 IPR013087 -
Seca3g04711 501 SMART c2h2final6 89 111 IPR013087 -
Seca3g04711 501 SUPERFAMILY beta-beta-alpha zinc fingers 88 185 IPR036236 -
Seca3g04711 501 MobiDBLite consensus disorder prediction 11 32 - -
Seca3g04711 501 FunFam protein indeterminate-domain 5, chloroplastic-like 143 222 - -
Seca3g04711 501 MobiDBLite consensus disorder prediction 460 480 - -
Seca3g04711 501 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 489 IPR031140 -
Seca3g04711 501 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04711 Seca-Chr3 91944195 91946285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04711 28 501 IDZ Gene Family AT1G03840 50.933 1.12e-145 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g04711 zf-C2H2 0.01 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04711 K25870 - qsu:112011855 638.647