Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04710 ATGACTCAGTGCAGTGACCCTGAAAACATCATAGTAGAGGGAAGAAAGGACAGTTTAATTAGAACTTGTCCCACATGTGGTCATCATATCAAATGTCAAGAACAGGGAGGTGGAATTCATGATTTACCTGGATTGCCTGCTGGAGTGAAGTTTGATCCAACAGATCAAGAGATTCTTGAACATTTGGAAGCGAAGGTGCGTTCTGATATTCATAAGCTTCACCCTCTAATTGATGAGTTCATACCTACTCTTGAAGGCGAGAATGGAATTTGCTATACTCATCCAGAGAAGTTGCCAGGAGTTAGCAAAGATGGCCTGATCCGCCATTTCTTTCACAGGCCTTCCAAGGCATATACAACAGGAACAAGGAAAAGGAGAAAGGTGCACTCTGATGAGGATGGTAGTGAGACACGTTGGCACAAAACAGGTAAGACTAGGCCAGTCTACAACAATGCCAAGTTAAAAGGGTACAAGAAAATCCTTGTACTTTACACTAACTATGGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTCATGCACCAATACCACCTTGGAAGTGATGAAGAGGAGAAAGAAGGGGAGTTAGTGGTCTCCAAAGTTTTCTATCAAACCCAACCCAGACAATGTGGTTCACTAATGAAAGATTCAGTTACTGGAAAACACAACATCAAGGGTCAAAGCATGGATGAGGTTATCAATAACAAAAACAATAATGGGTTTGTTGAGTACTACCATTCAAATTTCATATCATTTGATCAAGGGAGCCAACATAGATCTAACACTGCCCATGAAGTAATTCCTCATTTTCCTGTCCATGATGCTGCTCCTTATATTCCTTGA 843 0.4104 MTQCSDPENIIVEGRKDSLIRTCPTCGHHIKCQEQGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDEDGSETRWHKTGKTRPVYNNAKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKEGELVVSKVFYQTQPRQCGSLMKDSVTGKHNIKGQSMDEVINNKNNNGFVEYYHSNFISFDQGSQHRSNTAHEVIPHFPVHDAAPYIP. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04710 280 ProSiteProfiles NAC domain profile. 45 204 IPR003441 GO:0003677|GO:0006355
Seca3g04710 280 Pfam No apical meristem (NAM) protein 46 185 IPR003441 GO:0003677|GO:0006355
Seca3g04710 280 MobiDBLite consensus disorder prediction 119 142 - -
Seca3g04710 280 FunFam NAC domain-containing protein 73 54 208 - -
Seca3g04710 280 Gene3D NAC domain 54 209 IPR036093 GO:0003677|GO:0006355
Seca3g04710 280 SUPERFAMILY NAC domain 40 204 IPR036093 GO:0003677|GO:0006355
Seca3g04710 280 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 19 226 IPR044799 GO:0003700
Seca3g04710 280 MobiDBLite consensus disorder prediction 124 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04710 Seca-Chr3 91917333 91919226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04710 21 280 NAC Transcription Factor Family AT4G28500 62.989 2.85e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g04710 NAM 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04710 - - gmx:100797459 528.48