Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04709 ATGCTTCTCTGTTTTCTCTTCCTGGTGCTGTTTCTCTCTCCTCCGCCACTCACTCTCTCTCTAAACCAAGACGGCCTATTTCTCCTCAGCGCCAAGCAGCAACTCTCCGACTTTCAAAACTCCCTCGCCACGTGGAACGACGCCGACGCCACGCCCTGCCGGTGGAGCGGCATCACCTGCGACACCATCACCGGCTCCGTCACCGCCGTGAACCTCTCGTTTTCCGGCATCTCCGGCCCCTTCCCCAGCGTCCTCTGCCGCATACCTTCTCTCTCCTTTCTCTCTCTCTCCGACAATCTCATCAGCTCCACCCTCCCAGCCGCCGTCATCGCCGCCTGCCGCCACCTTCGTCACCTCGACCTCTCCCAGAACGCCCTTGTGGGACCCATCCCTGACACCTTCTCCGAAATCCCCTCCCTCCGCCACCTCGACCTCTCCTTCAACAACCTCTCCGGCGACATTCCGGCGAACCTTGGCCAGCTCCAGCAACTCGAATCACTCATCCTTGTCTACAACTTCCTCAACGGGACAATTCCCAGTTCTCTCGGGAACATCTCAACACTAAAGAAGCTTCAACTCGCTTACAACCCGTTCACCCCGGGCCCGTTACCGAGCGAACTCGGTAACCTCACCAACCTCCGTGACCTGTGGCTCGCACAATGCTATCTCGTGGGTCCTATTCCAACCTCGCTGGGTAACCTTGCTAGTTTAACGAGTCTTGATCTGTCACAGAACATGCTCACTGGAACAATACCAGAGTCGTTAGCGGGTTTGAAGAGCGTGACTCAGATTGAACTCTATCACAACTCACTCTCCGGCGAGTTGCCAACCGGAATCTCGAACCTTACTCGGCTGGAACTGTTCGACGCGTCGATGAACAACTTGACTGGGACGATTCCTCCCGGGTTGTGCGAGTTGAAGCTTGCGTCGCTTAACTTGTTCGAGAATCGCCTCGAAGGGTCGTTGCCGGAGAGTATAGCTCGTTCTCCCAATCTCTACGAGCTGAAATTGTTCAGCAACAAGCTTGTTGGTCCTTTGCCGAGTGATTTGGGGAGCAACTCGCCGTTGCGTCGAATTGATGTTTCGTACAACCAGTTTTCCGGCGAGATTCCGGCGAGCTTGTGCCGTCAGGGACAGTTCGAGGAACTCATTATGCTTCGCAATTCATTTTCCGGGAAAATTCCTGATAGTCTTGGGAATTGCAAGAGTTTAACGAGGGTTCGGCTAAGTAACAATAATCTCTCTGACGTTGTTCCTGATGCGTTCTGGAGTCTGCCCCGTTTGTATTTGCTTGAGCTTATTGATAATTCTTTTTCTGGGCATATTTCTAAAGCCATTTCAGGTGCCTCTAATCTCTCAAGTTTGGTACTTTCAAATAACCAGTTTTCTGGGTCAATTCCTGATGAAATTGGGTTATTGGATGGTCTTGTGGAATTTTCTGCCAGCCATAATAATCTTTCGGGTCAGATTCCGGACAGTATGTTCAAGTTAAACCAGTTGAGTAGTCTTAATCTCAGTTATAATCAACTTTCGGGAGAACTTATGGGTGGAATTGGTCATCTGACTAAGCTCACAAACCTTATTTTGACACACAATAGTCTTGATGGCAGTATTCCAAGCGAATTAGGAAACTTGCCTGTGCTTGATATTCTTGATCTTTCTGACAACAGCTTCTCTGGTGCAATACCACCACAGCTGCAAAATTTGAAGATCTATAAGTTCAACTTGTCAAACAACAAGCTTTCTGGTGATATTCCTCCCCTTTTTGCCAATGAAAAGTATAGAATGAGTTTTGTAGGAAATCCTGGCCTCTGTGGCCATCTCTTTGGGCTTTGTCCAAGCTCTGGTGAGAGTAAAAAGAGGAGGTCTGTGTGGATTTTTCGGTCCATATTTGTGCTTGCTGTAGTTGTTTTCATATTTGGAATGACCTGGTTTTACTTGAAATATAGGAAGGTCAAGAAGTTGAAAAAGGGGTTCAACATTTCTAAGTGGAGGTCATTTCATAAGCTGGGTTTTAGTGAGTTTGAGATTGTTAAATTGCTGAGTGAAGACAATGTAATTGGAAGTGGAGCATCAGGGAAGGTCTACAAGGTAGTGCTTAGCAATGGTGAGGTGGTGGCCGTGAAGAAATTGTGGAGAGCATCTAAGAATGTAAATGAAAATGTTCTTTCTGGAAAAGATGGGTTTGATGTTGAAGTTGAAACACTAGGAAAGATTAGGCACAAAAATATTGTAAGATTGTGGTGTTGTTACAACAGTGGTGTTAACAAACTATTGGTTTATGAATATATGCCAAATGGGAGCTTGGCTGGTTTGTTGCAGAATAACGAGAAAAGATTGTTGGATTGGCCGACTAGGTATAAAATTGCTATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCACGATTGTGTCCCACCCATTGTTCACAGGGACATCAAATCTAACAATATATTGTTGGATGGAGAGTTTGTGGCAAAGGTTGCAGATTTTGGAGTTGCCAAAATTGTTACCGGAGTCAGCAAAGATGGACAATCCATGTCTGTGATTGCTGGATCTTATGGATACATTGCACCAGAATACGCATATACTCTTCGTGTGACCGAAAAGAGTGATATTTATAGCTTTGGCGTGGTCATTTTGGAGTTGGTAACAGGGAAACCCCCTATTGATGCAGAGTTCGGTGAAAATAATTTGGTAAAATGGGTTTCCTCCATGTTGGAAAAGAAAGAATTGGATCATGTGATTGATCCTACTCTAGATTCCAAATACAAGGAAGAAATAAGCAAGGTACTTAGTGTGGGGCTTCAATGTACCAACACTCTTCCAATAACCCGCCCTTCAATGAGGACTGTGGTGAAAATGCTTCAGGATGTAAAAATAGTTCCCAAATCCAAAAGTGTCAAGGATGGAAAAATCTCATATTACCATGAAGAGGTGTCTTATAATCAGGGAAGCATAGTTTGA 2967 0.459 MLLCFLFLVLFLSPPPLTLSLNQDGLFLLSAKQQLSDFQNSLATWNDADATPCRWSGITCDTITGSVTAVNLSFSGISGPFPSVLCRIPSLSFLSLSDNLISSTLPAAVIAACRHLRHLDLSQNALVGPIPDTFSEIPSLRHLDLSFNNLSGDIPANLGQLQQLESLILVYNFLNGTIPSSLGNISTLKKLQLAYNPFTPGPLPSELGNLTNLRDLWLAQCYLVGPIPTSLGNLASLTSLDLSQNMLTGTIPESLAGLKSVTQIELYHNSLSGELPTGISNLTRLELFDASMNNLTGTIPPGLCELKLASLNLFENRLEGSLPESIARSPNLYELKLFSNKLVGPLPSDLGSNSPLRRIDVSYNQFSGEIPASLCRQGQFEELIMLRNSFSGKIPDSLGNCKSLTRVRLSNNNLSDVVPDAFWSLPRLYLLELIDNSFSGHISKAISGASNLSSLVLSNNQFSGSIPDEIGLLDGLVEFSASHNNLSGQIPDSMFKLNQLSSLNLSYNQLSGELMGGIGHLTKLTNLILTHNSLDGSIPSELGNLPVLDILDLSDNSFSGAIPPQLQNLKIYKFNLSNNKLSGDIPPLFANEKYRMSFVGNPGLCGHLFGLCPSSGESKKRRSVWIFRSIFVLAVVVFIFGMTWFYLKYRKVKKLKKGFNISKWRSFHKLGFSEFEIVKLLSEDNVIGSGASGKVYKVVLSNGEVVAVKKLWRASKNVNENVLSGKDGFDVEVETLGKIRHKNIVRLWCCYNSGVNKLLVYEYMPNGSLAGLLQNNEKRLLDWPTRYKIAIDAAEGLSYLHHDCVPPIVHRDIKSNNILLDGEFVAKVADFGVAKIVTGVSKDGQSMSVIAGSYGYIAPEYAYTLRVTEKSDIYSFGVVILELVTGKPPIDAEFGENNLVKWVSSMLEKKELDHVIDPTLDSKYKEEISKVLSVGLQCTNTLPITRPSMRTVVKMLQDVKIVPKSKSVKDGKISYYHEEVSYNQGSIV. 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04709 988 ProSiteProfiles Leucine-rich repeat profile. 139 162 IPR001611 GO:0005515
Seca3g04709 988 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 21 185 - -
Seca3g04709 988 PRINTS Leucine-rich repeat signature 237 250 - -
Seca3g04709 988 PRINTS Leucine-rich repeat signature 497 510 - -
Seca3g04709 988 SUPERFAMILY L domain-like 35 374 - -
Seca3g04709 988 ProSiteProfiles Leucine-rich repeat profile. 451 473 IPR001611 GO:0005515
Seca3g04709 988 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 764 972 - -
Seca3g04709 988 FunFam Leucine-rich receptor-like protein kinase family protein 203 301 - -
Seca3g04709 988 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Seca3g04709 988 ProSiteProfiles Protein kinase domain profile. 681 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04709 988 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Seca3g04709 988 SUPERFAMILY RNI-like 275 589 - -
Seca3g04709 988 FunFam Receptor-like protein kinase HSL1 307 614 - -
Seca3g04709 988 Pfam Leucine rich repeat 89 150 IPR001611 GO:0005515
Seca3g04709 988 Pfam Leucine rich repeat 212 271 IPR001611 GO:0005515
Seca3g04709 988 FunFam Receptor-like protein kinase HSL1 664 763 - -
Seca3g04709 988 SUPERFAMILY Protein kinase-like (PK-like) 680 957 IPR011009 -
Seca3g04709 988 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 388 957 - -
Seca3g04709 988 SMART LRR_typ_2 473 497 IPR003591 -
Seca3g04709 988 SMART LRR_typ_2 137 161 IPR003591 -
Seca3g04709 988 SMART LRR_typ_2 401 424 IPR003591 -
Seca3g04709 988 SMART LRR_typ_2 88 112 IPR003591 -
Seca3g04709 988 SMART LRR_typ_2 521 545 IPR003591 -
Seca3g04709 988 SMART LRR_typ_2 282 306 IPR003591 -
Seca3g04709 988 SMART LRR_typ_2 234 258 IPR003591 -
Seca3g04709 988 SMART serkin_6 681 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04709 988 ProSitePatterns Protein kinases ATP-binding region signature. 687 710 IPR017441 GO:0005524
Seca3g04709 988 Gene3D Phosphorylase Kinase; domain 1 664 763 - -
Seca3g04709 988 Gene3D Ribonuclease Inhibitor 20 199 IPR032675 -
Seca3g04709 988 Gene3D Ribonuclease Inhibitor 200 305 IPR032675 -
Seca3g04709 988 Pfam Protein kinase domain 683 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04709 988 Gene3D Ribonuclease Inhibitor 307 621 IPR032675 -
Seca3g04709 988 Gene3D Transferase(Phosphotransferase) domain 1 764 978 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04709 Seca-Chr3 91893339 91896947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04709 16 988 Receptor kinase-like Gene Family AT1G28440 59.615 0.0 1149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g04709 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04709 - - ccaj:109805711 1339.32