Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04683 ATGCTTCTCTTCATCTTGTTTGTTCTGTTGTTTCTTTCTCCTCCGCCGCTAACTCTCTCTCTAAACCAAGACGGCCTATTCCTCCTCCGTGCCAAGCAGCAACTCTCCGACCCTCAAAATTCTCTCGCCACGTGGAATGACGCCGACGCCACGCCCTGTCGGTGGCGCGGCATCACCTGCGACCCCATCACCGGCGCTGTCACCGCCGTTAACCTCTCATCCTCCGGCCTTTCTGGCCCCTTCCCCGGCGTCCTCTGCAGCCTCCCCTCTCTCTCCTCTCTCTCTCTATCCAACAACTCGTTCACCCCGAGTCTGATACCGAGTGAAATCGGTAACCTCACCAACCTGGAGGAACTGCAGCTCGCACAATGCAATCTCGTGGGTCCCATTCCAACCTCGCTTGGTAACCTCGCACGCTTAACGAGCCTTGATCTGTCACAGAACATGCTCACTGGAACCATACCGGAATCGTTCGCGGGGTTGAAATGTGTGACTCAGATCGAGCTCTATCACAACTCGCTCTCCGGCGAGTTGCCAAACGGAATCTCGAACCTGACTCGGCTGGAACTGTTCGACGCGTCGACAAACAACTTGACAGGGACGATTCCTCCCGGGTTGTGCGAGTTGAATCTCGCGTCGCTCAGCTTGTACGAGAATCGCCTTGAAGGAACGTTGCCGGAGGGCATAGCTCGTTCTCCCAATCTCTACGAGCTCCTATTGTACAACAACAGTCTCGTTGGCCCGTTGCCGAGTGATTTGGGGAGTAACTCGCCGTTGCGAGGAATAGATGTTTCGTACAACCAGTTTTCCGGTGAGATTCCGGCCAACTTGTGCCGTCAGGGACAGTTCTATGCACTCCTTATAATTCACAATTCATTCTCCGGGAAAATTCCTGAGAGTCTTGGGAATTGCAAGAGCTTAAAGAGGGTTCGGCTAAGTAACAATAAGCTCTCTGGCGAGGTTCCTGATGCTTTCTGGGGTCTGCCACGTGTGTATCTGCTTGAGCTTATTGATAATTCCTTTACTGGGCATATTTCTAAAGCCATCTCTGGTGCCTCTAGTCTCCAAAGTTTGTTACTTTCAAATAACCAGTTTTCTGGCTCCATTCCTGATGAAATTGGGTCATTGAATGGTCTTGTCGAATTTTCTGCCACCCATAATAAACTTTCAGGTCAGATTCCCGTCAGTATGTTTAAGTTAAGCCAGTTGAATAGTCTTAATCTCAGTTACAATCAACTTTCCGGAGAACTTGTGAGTGGAATTACAAATTGGACTAAACTCACAAACCTTATTTTGGCAAATAATAGTCTTGATGGTAGTATTCCAAGCGAATTAGGAAGCCTGCCTGTGCTTACTAATCTTGATCTTTCTTGCAATAACTTCTCTGGTGAAATTCCACCACAGCTACAAAATTTGAAGCTCTATAAGTTCAACTTGTCAAACAACAAGCTTTCTGGTGATATTCCTCCCCTTTTTGCCAATGACAAGTATAGAATGAGTTTTGTAGGAAATCCTGGACTCTGTGGCCATTTCTCTGGGCTTTGTCCAAGATCTGGTAAGAGTAAAAAGAGAAGATCTGTGTGGGTTTTACGCTCCATATTTGTGTTTGCTGGAGTTGTGTTCATCTTTGGGGTTGCTTGTTTTTACTTGAAATACAGGAAGGTCAAGAAGTTGAAAAGACGGGTCAACATGTGGAGGTCGTTTCATAAACTGCGCTTCAGTGAGTTTGAGATTGTTAAATTGCTGAGTGAAGAAAATGTAATTGGAAGTGGAGCATCTGGAAAGGTCTACAAGGTAGTGCTTAGCAATGGCGAGGTGGTGGCAGTGAAGAAACTGTGGGGGGCATCTGAGACTGAAAATGAAAATGATCGTTCTGGAAAAGATGAGTTTGATGTTGAAGTTGAAACACTAGGAAAGATTAGGCACAAGAATATTGTAAGGTTGTGGTGTTGCAGCAACAGTGGTGTAAACAAGCTACTGGTTTATGAGTATATGCCAAATGGGAGCTTGGGTGACTTGTTGAAGAATAACAGGAAAAGCTTATTGGATTGGCCGACTAGGTATAAAATTGCTATTGATGCTGCTGAGGGGCTTTCTTATTTGCATCATGATTGTGTCCCATCCATTGTTCACAGGGACGTCAAATCTAACAACATATTATTGGATGGAGAGTTTGTGGCAAAAGTTTCAGATTTTGGAGTTGCCAAAATTGTTACTGGAGTCAACAAAGGGGGACAATCCATGTCTGTGATTGCTGGATCTTTTGGCTACATTGCACCAGAATACGCTTATACTCTTCGGGTGAATGAAAAGACTGATGTTTATAGCTTTGGTGTGGTGATTTTGGAGTTGGTAACTGGGAAACCCCCTATTGATGCAGAGTACGGGGAAAATGATTTGGTGAAATGGGTTTCCTCCATGTTGGAACAAAATGGATTGGATCATGTCATTGATCATACTCTAGATTCCAAATACAAGGAAGAAATCAACAGGGTACTTAATGTGGGGCTTCAATGTACCAGCTCTTTTCCAATGACTCGCCCTGCAATGAGGAGTGTGGTGAAAATGCTTCAGGATGTAAAAAAAGTTCCCAGATCCAAAAGTGTCAAGGATGGAGAAATCTCTTATAAATAG 2634 0.4529 MLLFILFVLLFLSPPPLTLSLNQDGLFLLRAKQQLSDPQNSLATWNDADATPCRWRGITCDPITGAVTAVNLSSSGLSGPFPGVLCSLPSLSSLSLSNNSFTPSLIPSEIGNLTNLEELQLAQCNLVGPIPTSLGNLARLTSLDLSQNMLTGTIPESFAGLKCVTQIELYHNSLSGELPNGISNLTRLELFDASTNNLTGTIPPGLCELNLASLSLYENRLEGTLPEGIARSPNLYELLLYNNSLVGPLPSDLGSNSPLRGIDVSYNQFSGEIPANLCRQGQFYALLIIHNSFSGKIPESLGNCKSLKRVRLSNNKLSGEVPDAFWGLPRVYLLELIDNSFTGHISKAISGASSLQSLLLSNNQFSGSIPDEIGSLNGLVEFSATHNKLSGQIPVSMFKLSQLNSLNLSYNQLSGELVSGITNWTKLTNLILANNSLDGSIPSELGSLPVLTNLDLSCNNFSGEIPPQLQNLKLYKFNLSNNKLSGDIPPLFANDKYRMSFVGNPGLCGHFSGLCPRSGKSKKRRSVWVLRSIFVFAGVVFIFGVACFYLKYRKVKKLKRRVNMWRSFHKLRFSEFEIVKLLSEENVIGSGASGKVYKVVLSNGEVVAVKKLWGASETENENDRSGKDEFDVEVETLGKIRHKNIVRLWCCSNSGVNKLLVYEYMPNGSLGDLLKNNRKSLLDWPTRYKIAIDAAEGLSYLHHDCVPSIVHRDVKSNNILLDGEFVAKVSDFGVAKIVTGVNKGGQSMSVIAGSFGYIAPEYAYTLRVNEKTDVYSFGVVILELVTGKPPIDAEYGENDLVKWVSSMLEQNGLDHVIDHTLDSKYKEEINRVLNVGLQCTSSFPMTRPAMRSVVKMLQDVKKVPRSKSVKDGEISYK. 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04683 877 FunFam Receptor-like protein kinase HSL1 565 664 - -
Seca3g04683 877 ProSiteProfiles Protein kinase domain profile. 582 860 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04683 877 SMART serkin_6 582 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04683 877 Pfam Leucine rich repeat 139 198 IPR001611 GO:0005515
Seca3g04683 877 Gene3D Ribonuclease Inhibitor 26 134 IPR032675 -
Seca3g04683 877 ProSitePatterns Protein kinases ATP-binding region signature. 588 611 IPR017441 GO:0005524
Seca3g04683 877 SUPERFAMILY L domain-like 286 509 - -
Seca3g04683 877 Gene3D Ribonuclease Inhibitor 213 518 IPR032675 -
Seca3g04683 877 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
Seca3g04683 877 Pfam Leucine rich repeat N-terminal domain 22 61 IPR013210 -
Seca3g04683 877 Gene3D Transferase(Phosphotransferase) domain 1 665 874 - -
Seca3g04683 877 SUPERFAMILY Protein kinase-like (PK-like) 579 857 IPR011009 -
Seca3g04683 877 SUPERFAMILY L domain-like 22 322 - -
Seca3g04683 877 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 858 - -
Seca3g04683 877 PRINTS Leucine-rich repeat signature 140 153 - -
Seca3g04683 877 PRINTS Leucine-rich repeat signature 400 413 - -
Seca3g04683 877 Gene3D Ribonuclease Inhibitor 135 212 IPR032675 -
Seca3g04683 877 Pfam Protein kinase domain 584 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04683 877 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 21 185 - -
Seca3g04683 877 FunFam Leucine-rich repeat receptor-like protein kinase 665 873 - -
Seca3g04683 877 Gene3D Phosphorylase Kinase; domain 1 564 664 - -
Seca3g04683 877 SMART LRR_typ_2 137 160 IPR003591 -
Seca3g04683 877 SMART LRR_typ_2 400 424 IPR003591 -
Seca3g04683 877 SMART LRR_typ_2 353 376 IPR003591 -
Seca3g04683 877 SMART LRR_typ_2 185 209 IPR003591 -
Seca3g04683 877 SMART LRR_typ_2 304 327 IPR003591 -
Seca3g04683 877 SMART LRR_typ_2 88 113 IPR003591 -
Seca3g04683 877 SMART LRR_typ_2 448 471 IPR003591 -
Seca3g04683 877 FunFam Receptor-like protein kinase HSL1 210 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04683 Seca-Chr3 91292052 91295501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04683 77 875 Receptor kinase-like Gene Family AT1G28440 59.755 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca3g04683 Pkinase 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04683 - - ccaj:109805711 1075.85