Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04678 ATGGGTCGAGATTCCAATGGGAATATGAATATGTGTCAATATGTTTGCAATAGAGAGGGATTGAGGAACAAAAAACACTTTTTAAGGGTAGATAGAAAAAAAGAGCATAAACCAGTCACTCGTACCAATTGTCAAGCTAAGCTTCAGATACACTTAGATTACAAGACATCAAAATGGAAAGTGGTGTCCTTTGAGGAGTGTCATAACCATGACCCAACCCCTCCCAAATTTGTGCACCTACACCCCGCTTACTGTGGCATTACTGATGCAGATAAAGCCCATGTGGATTGCTTGCGTTCGAATGGTGTTATTGTAATTAGTAATTTATGGTTATTTTAA 339 0.3864 MGRDSNGNMNMCQYVCNREGLRNKKHFLRVDRKKEHKPVTRTNCQAKLQIHLDYKTSKWKVVSFEECHNHDPTPPKFVHLHPAYCGITDADKAHVDCLRSNGVIVISNLWLF. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04678 112 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 5 72 - -
Seca3g04678 112 Pfam FAR1 DNA-binding domain 6 71 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04678 Seca-Chr3 91232580 91232918 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g04678 FAR1 4.8e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04678 - - ccaj:109792835 132.109