Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04665 ATGGAGGGTGGTTCGGAAGGAGAAACGAAGAAGCCACCGGAGGGGGAGAACAAGGTCAAGCGCAAAATGAAGACTGCTTCGCAGTTGGAGGTTCTGGAGAAAACATATGCTGTGGATGCCTACCCTTCAGAGGCGTTGCGGGCTGAGCTATCTGAGAAGTTGGGTCTGTCTGATCGTCAATTGCAGATGTGGTTCTGTCACCGGAGACTGAAGGACAGAAAGGCTGTGCCGGCAGCCAAGAAGCTGCAAAATGATTTGCCTCCAGCTTCGGCTCCGGTGGTGGAGGGTGTTGAGCAAATACCAGTGGCTGATGTTAGTCATGAACGTAGTTTGGCTTCTGGGTTGAGGCCATTTGGTCATCTGGACTCGCGGCGAGTTATGCCAAGGCCTGGGATGATGGTCATTCCTAGGATGGGAGCTGGATTGCCTGCAATGGAGAGTAGCAGTTACTATGAACCTCGTCAGGCCATAGAGGAGCTGAGAGCTATTGCATTTGTGGAGAGACAGTTAGGAGAGCCATTAAGGGAGGATGGACCGATTCTAGGGATGGAATTTGATTCCTTGCCACCGGGTGCATTTGGTGCACCAATAGGGGCAGTGACAATGGGGCAACACAGGCAATCTGGAAGGCCTTTTGAGGCAAAAATTTATGAACAGCTGGACAAGGGCGTTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAACAGCCAACTGTTAGAAATGAAACGAATGAGCGAGTTGCTGCCCCTATCCACTATAATTCTCTTGATGGCATTCCACATGCTAGGACTATATTATCTAGTGCACGATCTTTCCATAAGGGGAATGAATCTGCACCTTATGGGTATGGAGTTCAAGGTCAGATACCTGCTCTAAATCTTTTGTCTCAGCAAAGTAGGCAGAATCATCTTTTGCCTTCTGCTTCAGGAGGGACTGACGATGTTCCACGACAGAACAAATTTGTTGATGTAACTGCTGGTACTCATAGTGAGGCTCACCCAGTAACTCTTATTGATGGCCCTCTAGTACCATCTGATAGGAGGATTATCCATGAGGAGGAACTTTCAAGGTTTCAAAGGAAGCGGAAGAATGAAGAGGCTAGAATGCAACGGGAACTTGAAGCACAAGAGAAAAGAATTAGAAAAGAGCTTGAAAAGCAGGATATCCTAAGGCAAAAGTCTGTGGCTAATATTGTTTCTCTGTACATCAAGAGAGAAGAGCAAACAAAGAAAGAGATGGAGAGGCATGAACGTGAAAGGCGGAAGGAAGAGGAAAGATTATTGCGTGAAAGACAGCGAGAGGAGGAGAGGTACCAAAGAGAACAGAGGCGTGAACTGGAGCGGCGGGAGAAGTTTTTACAAAAGGAATCAATCAGAGCTGAGAAAATGAGACAGAAGGAAGAACTACGGAGGGAGAAAGAGGCAGCAAGGATAAAAGCTGCCAATGAGAGAGCTATTGCCCGCAGAATGGCCAAAGAATCAATGGAACTTATTGAAGATGAACGTCTAGAACTCATGGAGTTAGCTGCATCTAAGAAAGGGCTTTCTTCAATATTAGCTCTTGACTATGAAACTATGCAAAATCTTGAAATATACGATGATGGGCGGACTTCTTTCCCACCCAAGTCCGTGCAGTTGAAAAGAGCCTTTTCAATTCAACCTTGGTCAGATTCTGATGAGAATGTAGGAGATCTTCTGACGGTTTGGAGATTCTTGATTACCTTTGTTGATGTTCTTGGAATATGGCCCTTTACCTTGGATGAACTTATACAAGCTTTTCATGACTATGATCCTCGGTTGTTAGGTGAGATTCATATTGCTCTTCTGAGATCCATTGTAAAAGATATTGAAGATGTTGCAAGAACACCCTCTACTGGCTTAGGAGCTAATCAGAACAGTATTGCCAACTCTGGTGGGGGGCATCCACAGGTAGTTGAAGGGGCGTATATGTGGGGTTTTGATATAAGAAATTGGCAGCGGCATTTAAATCCATTAACATGGCCAGAGATTTTGCGACAATTTGCTTTATCAGCAGGATTTGGGCCTAAACTGAAGAAACAGAATATCGAGCAAGTGCATCCTTGCAATAACAATGAGGGTAATGATGGTAAAGATATAATTTCTAATCTACGCAGTGGAGCAGCTGTTGAAAATGCTCTTGCTATTATGCAAGAGAAGGGATTATCTAACCCAAGAAGATCTAGACATCGCTTGACGCCTGGAACTGTTAAATATGCTGCTTTTCATGTCCTTTCTCTTGAAGGAAACAGAGGCCTCAATATATTGGAAGTTGCAGACAAGATTCAGAAATCTGGGCTTCGTGATCTTACTACAAGCAAAACACCAGAGGCTTCTATAGCTGCTGCTTTGTCTAGGGATACAAAATTATTTGAAAGAACAGCTCCTTCAACTTATTGTGTACGCCCTGCATATAGAAAGGACCCAGCTTATTCTGAAGCCATTTATTCAGCTGCCAGGGAAAGAATCAGGATATTCAAAAGTGGATTTGCGGATGCAGAAGAAGCTGATGATGGTAAAAGGGATGAAGATTCTGAAAGTGATGTGGCAGAAGATGCTGAGATTGATGATTTAGGAACTGGATCAAATACGAAGGAGGGATCCAATTCTGAGGAATTTAATGCTAACAATGTAATGAGATGTAGAAGGGACAGTGGTGAGGCTTTGAAAATTCCTGGTGCTTGCTGTGAGAAAGTGGATAAGGGTTTAGCTTCAGTTGTTGCTGAAGGCTTCAACAAACATAAAGATGTTAGTACCTCTAGTGAAATTCCTGTCTGCAGCAATGATGTGACTAATCCTATTCTAGAAGGCATGGATGTTGATGAAAGCATTCCAGGTGAACCATGGGTACAAGGGCTTATGGAAGGAGAGTACTCAGATCTTAGTGTAGAGGAGCGCCTTCACGCTCTTGTTGCTTTGATTGGTGTGGCAATTGAAGGAAATTCTATCCGCATTGTACTTGAGGAACGTCTAGAAGCAGCAAATACTTTAAAGAAGCAGATGTGGGCAGAAGCACAGCTTGATAAACGACGTATCAAAGAGGATTATTTTGCTAAGATTCAGTCTGTCTCTTATTTGATCAGTAAGAATGAACCAGCTGTTTTATCTCCATCAGTAGAGGGTAAACAGTGTCCATTGCTTACTGTTGATGACAAAAATGATAAGGCTTTACTTTCTTCAATTGACCAGCATGAACAGGCAAACACACTACAAGAGAATCAGAATCATCTTCAGAGTTCCCAATTAGAAGTCAACACACAGACACAAGATTGCTCTACTGGCCTAGATAATTACTCTTTCCAACAATCAGGATATCCTGCTGAAAAATCAAGATCAAATTTAAAATCATACATTGGCTATTTGGCAGAACAAATTTACATGTACAGGTCATTGCCTCTTGGTTTGGATCGAAGACGTAATCGATACTGGCAGTTCATTACATCTGCTTCTCAAAATGATCCAGGTTGTGGTAGGATTTTTGTGGAGTTGCACGACGGTTGTTGGAAGTTGATTGATTCTGAAAAGAGTTTTGATGCTCTATTGGCATCTTTGGATGTACGTGGGATCAGGGAGTCTCACTTGCATATGATGTTGCAAAGAATTGAGATGTCCTTCAAGGAATCTGTTAGAAGAAATGTCCTAAATGGTAACTTGAGAATGCAAAACAGAGACACTGTAAAGAAACTCAAGACAGAAGCTATTGAAATGGCAACAGACCTAGATTGCAGTGCTAATATTCACTGTCCTGCTTCTGTATGCATTGATAATTTCGATGAATCAGAGACCTCCACATCTTTTGTGGTTCAGCTTGGAAGAAATGAAGCTGATAACAAAGATACTTTTCTGAGATATAGGGACTTTGAGAAATGGATGCGAAAGGAATGCCTAAATTCCTCAGTATTATGTGGGATGAAGTTTGGGAATAAAAGATGCAAAGAGCTGCTGGCCATATGTGATTTGTGCCACCATGTCTATTTCTTTGGAGAAACCCCATGTCCTTCATGCCATAGAACTTTCAGTACTTGTAAAAGCAACTTTAGTTCTTCTGCACATATTGCTCAATCTGAAGGCAGAGTGAAGATTGACACTGATTATATTCTTGTTTCATCATCATCATCTCCTTTGAGGATGAGATTGCTCAAAATCCTCTTGTCAGTTGTTGAGGCAACCCTTCCACAAGAAGCTCTGCAACCTCTTTGGACAGAGAGGTACAGGAAATCTTGGAGTACAAAGCTGGAAGCTTCCACATCATTTGAAGACCTTCTTCAGATATTGACTTCATTGGAAAGTTCTATAAAGAGGGAGTATTTGGCTTCAAATTTTGTAACTACCTGTGAGCTGTTGGGTTCCATCAGTTCTGCATGTCCTACTAATGATTCCATAGATGGTGAAAGTATGCCGGTACTTCCATGGGTGCCATATACCACGGCTGCTGTGGCTCTAAGGCTCTTGGAACTTGATGCATGCATCTTTTACACCTCAAAGCAGAAGTTGGAGTCTGAGAAGGATAAGAAAATAGGAATTGTTATGAAGCTTCCATCAAAATATGCTGCTGCTAAAATTTCCTGCAATGCTGGTGCAACAGAAACTTCACTTCAGGCCAAGCATACTGTAGAGAAACATGTTGATCTTGGAGCTGGCCTTACAAGCTACAGCAGAGGGCAAAGGACTCACCAAGCCCGTGCTCATTCTCCTGGTGGAAGATCACAAGTGAAGGTTGTTAGTTCAAGATCCAATTCTAGAAAGAGAAGCACTGCCTCTAACAGCAGGAAAATGGAAAAATTACTTGGATGGAAAGGAAAACCATGCGGACGAGGACATGTTCGTGGTCGTCGGAGCATTAGAAACAGGCAGAAACCAGCAGCCAAGGTGGATGTGATAAGTAGTGAGAGGGATGCCCCAAAAGATATTATTACAGAGGAAGCACCAGGTATTTTTGTCAGAGAGGATATTAATGAAGGTGAAATGGAAGCCACTGCTCTAATTGCTTGTAGTTCAGATAGATCAGGCTATGAAGATGATATTTATCAACCAACAGGTGATGAGTATGATTATTTGGTGGATAATAATGATGGATATCAGGGTGAATTTAGTGCAAAATCGGAGAACTTCGTGGAAAAGAACCCCTATAATGTGGATGATGAGGAAGGTGTGGATATTGATGATGATGATGATGTTGATGTCGATGTTAACTATGAAGAGGAGGATGAGCAAGTCGATCTTGATGTTGAAGATTATATAATTGGGGGGGACTCAGATAGGGTGAACAAGAGAGTAGAAAATGCAGAACAAAGCATGGATCCGGATGGAGTGGATTCTGCTTCATCAGATTACAGTGATTAA 5364 0.4251 MEGGSEGETKKPPEGENKVKRKMKTASQLEVLEKTYAVDAYPSEALRAELSEKLGLSDRQLQMWFCHRRLKDRKAVPAAKKLQNDLPPASAPVVEGVEQIPVADVSHERSLASGLRPFGHLDSRRVMPRPGMMVIPRMGAGLPAMESSSYYEPRQAIEELRAIAFVERQLGEPLREDGPILGMEFDSLPPGAFGAPIGAVTMGQHRQSGRPFEAKIYEQLDKGVSRTLHEYQFIPEQPTVRNETNERVAAPIHYNSLDGIPHARTILSSARSFHKGNESAPYGYGVQGQIPALNLLSQQSRQNHLLPSASGGTDDVPRQNKFVDVTAGTHSEAHPVTLIDGPLVPSDRRIIHEEELSRFQRKRKNEEARMQRELEAQEKRIRKELEKQDILRQKSVANIVSLYIKREEQTKKEMERHERERRKEEERLLRERQREEERYQREQRRELERREKFLQKESIRAEKMRQKEELRREKEAARIKAANERAIARRMAKESMELIEDERLELMELAASKKGLSSILALDYETMQNLEIYDDGRTSFPPKSVQLKRAFSIQPWSDSDENVGDLLTVWRFLITFVDVLGIWPFTLDELIQAFHDYDPRLLGEIHIALLRSIVKDIEDVARTPSTGLGANQNSIANSGGGHPQVVEGAYMWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPKLKKQNIEQVHPCNNNEGNDGKDIISNLRSGAAVENALAIMQEKGLSNPRRSRHRLTPGTVKYAAFHVLSLEGNRGLNILEVADKIQKSGLRDLTTSKTPEASIAAALSRDTKLFERTAPSTYCVRPAYRKDPAYSEAIYSAARERIRIFKSGFADAEEADDGKRDEDSESDVAEDAEIDDLGTGSNTKEGSNSEEFNANNVMRCRRDSGEALKIPGACCEKVDKGLASVVAEGFNKHKDVSTSSEIPVCSNDVTNPILEGMDVDESIPGEPWVQGLMEGEYSDLSVEERLHALVALIGVAIEGNSIRIVLEERLEAANTLKKQMWAEAQLDKRRIKEDYFAKIQSVSYLISKNEPAVLSPSVEGKQCPLLTVDDKNDKALLSSIDQHEQANTLQENQNHLQSSQLEVNTQTQDCSTGLDNYSFQQSGYPAEKSRSNLKSYIGYLAEQIYMYRSLPLGLDRRRNRYWQFITSASQNDPGCGRIFVELHDGCWKLIDSEKSFDALLASLDVRGIRESHLHMMLQRIEMSFKESVRRNVLNGNLRMQNRDTVKKLKTEAIEMATDLDCSANIHCPASVCIDNFDESETSTSFVVQLGRNEADNKDTFLRYRDFEKWMRKECLNSSVLCGMKFGNKRCKELLAICDLCHHVYFFGETPCPSCHRTFSTCKSNFSSSAHIAQSEGRVKIDTDYILVSSSSSPLRMRLLKILLSVVEATLPQEALQPLWTERYRKSWSTKLEASTSFEDLLQILTSLESSIKREYLASNFVTTCELLGSISSACPTNDSIDGESMPVLPWVPYTTAAVALRLLELDACIFYTSKQKLESEKDKKIGIVMKLPSKYAAAKISCNAGATETSLQAKHTVEKHVDLGAGLTSYSRGQRTHQARAHSPGGRSQVKVVSSRSNSRKRSTASNSRKMEKLLGWKGKPCGRGHVRGRRSIRNRQKPAAKVDVISSERDAPKDIITEEAPGIFVREDINEGEMEATALIACSSDRSGYEDDIYQPTGDEYDYLVDNNDGYQGEFSAKSENFVEKNPYNVDDEEGVDIDDDDDVDVDVNYEEEDEQVDLDVEDYIIGGDSDRVNKRVENAEQSMDPDGVDSASSDYSD. 1788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04665 1787 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Seca3g04665 1787 MobiDBLite consensus disorder prediction 844 862 - -
Seca3g04665 1787 Pfam HB1, ASXL, restriction endonuclease HTH domain 742 809 IPR007759 GO:0006355
Seca3g04665 1787 Coils Coil 400 487 - -
Seca3g04665 1787 SMART HOX_1 17 79 IPR001356 GO:0003677
Seca3g04665 1787 Pfam DDT domain 561 616 IPR018501 -
Seca3g04665 1787 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 1787 IPR044977 GO:0006357
Seca3g04665 1787 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 953 995 IPR028942 -
Seca3g04665 1787 SMART testlast3 560 619 IPR018501 -
Seca3g04665 1787 MobiDBLite consensus disorder prediction 1 24 - -
Seca3g04665 1787 CDD homeodomain 18 74 IPR001356 GO:0003677
Seca3g04665 1787 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1136 1208 IPR028941 -
Seca3g04665 1787 ProSiteProfiles HARE-type HTH domain profile. 742 811 IPR007759 GO:0006355
Seca3g04665 1787 MobiDBLite consensus disorder prediction 841 878 - -
Seca3g04665 1787 ProSiteProfiles DDT domain profile. 560 619 IPR018501 -
Seca3g04665 1787 MobiDBLite consensus disorder prediction 1753 1787 - -
Seca3g04665 1787 MobiDBLite consensus disorder prediction 1557 1599 - -
Seca3g04665 1787 SUPERFAMILY Homeodomain-like 12 74 IPR009057 -
Seca3g04665 1787 Pfam Homeodomain 20 74 IPR001356 GO:0003677
Seca3g04665 1787 MobiDBLite consensus disorder prediction 1557 1592 - -
Seca3g04665 1787 Gene3D - 2 76 - -
Seca3g04665 1787 MobiDBLite consensus disorder prediction 1754 1772 - -
Seca3g04665 1787 Coils Coil 349 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04665 Seca-Chr3 90982393 90998056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04665 1 1527 Homeobox Transcription Factor Family AT5G44180 50.924 0.0 1383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca3g04665 WSD 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04665 - - gmx:100797480 2484.91