Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g04664 | ATGGGTGTGGACTATTACAAGATCTTGCAGGTTGATAAGAATGCCAAAGAAGACGACTTGAAGAAGGCTTATAGGAAACTTGCCATGAAATGGCACCCTGATAAGAACCCAAGCAACAAGAAAGAAGCAGAAGCTAAGTTTAAGCAAATTTCCGAGGCCTATGAGGTGCTTAGTGATCCTCAGAAAAGAGCTATCTATGATCAATATGGGGAAGAGGGTCTGAAGGGTCAGGTTCCCCCTCCTGATGCTGGTGGTGCTGGACCCGGAACTACCTTCTTTTCCACAGGAGATATCCCCGGATCGTTTCGGTTCAATCCCAGGAGTGCTGATGACATTTTTGCAGAGTTCTTTGGGTTCTCAAGCCCATTTGGTGGCATGGGTGGGAGAGGTGGTGGTGGCATGAGATCGAGGTTCTCTGGTGGGATGTTTGGTGATGATATGTTTGGATCTTTTGGAGAAGGAGGAGGAGGGGTACATATGAATCAAGGTGCTCCTCGCAAAGCTCCTCCTGTTGAGAACAGGTTGCCCTGCACTCTGGAGGAGATATATAAAGGGGCTACAAAGAAGATGAAGATTTCTAGAGAAATTACAGATGCCACTGGCAAGAGCAATCTGGTGGAAGAAATCTTGACCATTAATATCAAGCCTGGTTGGAAGAAGGGGACAAAGATCACCTTCCCAGAGAAGGGTCATGAACAGCCAAATGTAATACCTGCAGACCTTGTTTTCATTGTTGATGAAAAACCACATGGTGTCTTTATTCGCGATGGAAATGATCTGATTGTTACTAAGAAGATTTCTCTTGCGGAAGCCTTAACCGGGTATACAGTGCACCTCACAACCCTTGATGGTAGAAATTTAAGCATACCTATTAACAATGTTATCCATCCCAATTATGAGGAGGTTGTCCCAAAAGAAGGAATGCCATTCCCCAAGGATCCGTCAAAGAAGGGAAACTTGAGGATAAAGTTCAGCATCAAGTTCCCTACTCGACTCACTGATGAACAAAAAGCAGGAATTAGGAAACTCTTGGCTGCCTCAGTCTGA | 1047 | 0.4508 | MGVDYYKILQVDKNAKEDDLKKAYRKLAMKWHPDKNPSNKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDAGGAGPGTTFFSTGDIPGSFRFNPRSADDIFAEFFGFSSPFGGMGGRGGGGMRSRFSGGMFGDDMFGSFGEGGGGVHMNQGAPRKAPPVENRLPCTLEEIYKGATKKMKISREITDATGKSNLVEEILTINIKPGWKKGTKITFPEKGHEQPNVIPADLVFIVDEKPHGVFIRDGNDLIVTKKISLAEALTGYTVHLTTLDGRNLSIPINNVIHPNYEEVVPKEGMPFPKDPSKKGNLRIKFSIKFPTRLTDEQKAGIRKLLAASV. | 349 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g04664 | 348 | FunFam | DnaJ subfamily B member 13 | 250 | 330 | - | - | |
| Seca3g04664 | 348 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 344 | - | - | |
| Seca3g04664 | 348 | FunFam | DnaJ subfamily B member 13 | 3 | 127 | - | - | |
| Seca3g04664 | 348 | CDD | DnaJ | 4 | 59 | IPR001623 | - | |
| Seca3g04664 | 348 | Pfam | DnaJ domain | 4 | 67 | IPR001623 | - | |
| Seca3g04664 | 348 | Gene3D | DnaJ domain | 3 | 155 | IPR036869 | - | |
| Seca3g04664 | 348 | Gene3D | - | 250 | 330 | - | - | |
| Seca3g04664 | 348 | Gene3D | - | 170 | 248 | - | - | |
| Seca3g04664 | 348 | SUPERFAMILY | Chaperone J-domain | 3 | 128 | IPR036869 | - | |
| Seca3g04664 | 348 | CDD | DnaJ_C | 169 | 332 | - | - | |
| Seca3g04664 | 348 | SMART | dnaj_3 | 3 | 62 | IPR001623 | - | |
| Seca3g04664 | 348 | ProSiteProfiles | dnaJ domain profile. | 4 | 70 | IPR001623 | - | |
| Seca3g04664 | 348 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 171 | 250 | IPR008971 | GO:0006457|GO:0051082 | |
| Seca3g04664 | 348 | FunFam | Dnaj homolog subfamily b member | 167 | 248 | - | - | |
| Seca3g04664 | 348 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Seca3g04664 | 348 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Seca3g04664 | 348 | PRINTS | DnaJ domain signature | 62 | 81 | IPR001623 | - | |
| Seca3g04664 | 348 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Seca3g04664 | 348 | ProSitePatterns | Nt-dnaJ domain signature. | 47 | 66 | IPR018253 | - | |
| Seca3g04664 | 348 | Pfam | DnaJ C terminal domain | 172 | 329 | IPR002939 | - | |
| Seca3g04664 | 348 | SUPERFAMILY | HSP40/DnaJ peptide-binding domain | 253 | 338 | IPR008971 | GO:0006457|GO:0051082 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g04664 | Seca-Chr3 | 90979652 | 90981423 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g04664 | 5 | 69 | C2H2 Transcription Factor Family | AT1G74250 | 40.580 | 2.42e-10 | 60.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g04664 | K09510 | - | gmx:100778672 | 564.303 |