Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04661 ATGCTTGCGGTGTCACCTTTGAGGAGCACCAAAGATGAAATCAAAGAAGAGACGGAGAGCTTTTCGATTGGAACTTCAACAACCGCTGATGTCATCGGCGACTTCGGTGACTTTTCCGATGGGAGTTTATTGGAGAGCATCAACTTCGACGACCTCTTTGTCGGCATCAGCGTCGACGGTGATGTGTTGCCGGATTTGGAAATGGATCCGGAGATTTTCGCCGAGTTTTCCGTCAGCGGCGGCGAGGAATCGGAGATAAACTCATCGGCTTCGGTGGAAAATAACAATAACAGAAAAGGTGATGATGACTGGAATTTGAAGAAAGATGACGAAGATAAAACGGCAACAACAGAAACTTCTTCTGCTTCGGGTCAAGGTTCGGGGTCAACGAGCCGAGGGGAAGAGATAGTGAGTAAAAGGGATGAATCGGTGGTGGTGAATCCGTCGCCAAAGGATGGTGGAAAAGGAAGAAAATCATCATCAGCTCAAGCAAAGAATCCTCAAGGGAAGAGAAAAGTCAAGGTGGATTGGACACCAGAATTGCATAGGCGATTTGTGCAAGCTGTGGAACAGTTAGGAGTGGATAAGGCGGTGCCTTCAAGGATTTTAGAGATTATGGGAATTGATTGTCTCACTCGTCATAACATTGCGAGCCACCTTCAAAAATATAGATCCCATAGAAAACATTTGTTAGCGCGTGAAGCTGAAGCAGCAAGCTGGAATCAAAAGAGACAACTGTATGGTGCAGGAGGGAAGAGAGAGGTGAGTCCATGGCTAGCACCAACCATGGGTTTCCCTCCCATGACTCCTACAATGCACCATTTTAGACCCTTACATGTATGGGGTCATCCTTCGATGGACCAGTCATTTATGCACATGTGGAATAAACATCTGCCACATTCGCCGCCGCCCTCATGGCCACCAGCGGCGGCTCCTCCACCACGTCAAGACCCTTCATTTTGGCACGGTCAGCACCAACGGACTCCAAACGCACTAATCCCAGGAACACCTTGTTTTCCACAACCTCTGACAACAGCGGTAACTATTCATTCATTACTCACCTTACTCTTTTGGAGCCATGCACGTTGTCTTTTCTTTTAA 1101 0.4759 MLAVSPLRSTKDEIKEETESFSIGTSTTADVIGDFGDFSDGSLLESINFDDLFVGISVDGDVLPDLEMDPEIFAEFSVSGGEESEINSSASVENNNNRKGDDDWNLKKDDEDKTATTETSSASGQGSGSTSRGEEIVSKRDESVVVNPSPKDGGKGRKSSSAQAKNPQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQKRQLYGAGGKREVSPWLAPTMGFPPMTPTMHHFRPLHVWGHPSMDQSFMHMWNKHLPHSPPPSWPPAAAPPPRQDPSFWHGQHQRTPNALIPGTPCFPQPLTTAVTIHSLLTLLFWSHARCLFF. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04661 366 Pfam Myb-like DNA-binding domain 175 224 IPR001005 -
Seca3g04661 366 SUPERFAMILY Homeodomain-like 170 229 IPR009057 -
Seca3g04661 366 MobiDBLite consensus disorder prediction 81 95 - -
Seca3g04661 366 Gene3D - 169 230 - -
Seca3g04661 366 MobiDBLite consensus disorder prediction 96 116 - -
Seca3g04661 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 228 IPR017930 -
Seca3g04661 366 MobiDBLite consensus disorder prediction 117 133 - -
Seca3g04661 366 NCBIfam myb-like DNA-binding domain, SHAQKYF class 172 226 IPR006447 GO:0003677
Seca3g04661 366 MobiDBLite consensus disorder prediction 1 21 - -
Seca3g04661 366 MobiDBLite consensus disorder prediction 301 315 - -
Seca3g04661 366 MobiDBLite consensus disorder prediction 78 174 - -
Seca3g04661 366 FunFam Two-component response regulator 168 231 - -
Seca3g04661 366 MobiDBLite consensus disorder prediction 301 324 - -
Seca3g04661 366 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 345 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04661 Seca-Chr3 90849633 90852148 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04661 1 351 G2-like Transcription Factor Family AT5G44190 41.600 2.35e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g04661 Myb_DNA-binding 4.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04661 - - aprc:113858121 455.677