Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04646 ATGGTTGTGAAGGCGCCGAAGAATATGAGTATCAAGAACAAGAAGCCTTGCAATGCAAGCGAGATTCACTACAGGGGCGTGAGGAAGAGGCCTTGGGGTCGTTACGCTGCAGAGATAAGGGATCCCGGCAAGAAGAGCCGTGTTTGGCTGGGCACCTTTGACACCGCCGAGGAAGCCGCCAGGGCCTATGACGCCGCCGCACGACAGTTCCGTGGCCCTAAGGCAAAGACTAACTTCCCTTCTCCCTCGGAGGACAACAACATCAACAACGCTAACAGCAACAACCAGAGTCCCAGCCAGAGCAGCACCGTCGAGTCTTCCACGCCGGAGCGTGAGGTCACGCGCCGTTCCGCCGCCGTCATGGATCGTTTCCCGTTTCTCCCCCTGCAGCCGCAACTCATGGCGTTCGCCGGCGCCGGCGCCGGTGCCGTTGAGGGAATGGTGACTCCCGTGCGCCCTGTTTTCTTCCTCGATCCCGCTGCAAGGGCAGAGTTTCTGAGCCAGCGGTTTCCTGTCCGGTTCGAACCGGCACCGGTCGAGTTTAACGCCGGATTTTGCGGTGGATCCCAAAGTGATTCAGATTCATCCTCCGTCGTTGATTGTCAGCCGAAAAGAGCTCTCAATCTTGATCTTAACTTGGCTCCACCATCGGATGCTTAA 660 0.5788 MVVKAPKNMSIKNKKPCNASEIHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPSPSEDNNINNANSNNQSPSQSSTVESSTPEREVTRRSAAVMDRFPFLPLQPQLMAFAGAGAGAVEGMVTPVRPVFFLDPAARAEFLSQRFPVRFEPAPVEFNAGFCGGSQSDSDSSSVVDCQPKRALNLDLNLAPPSDA. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04646 219 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Seca3g04646 219 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 167 - -
Seca3g04646 219 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700|GO:0006355
Seca3g04646 219 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Seca3g04646 219 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Seca3g04646 219 MobiDBLite consensus disorder prediction 72 115 - -
Seca3g04646 219 MobiDBLite consensus disorder prediction 79 108 - -
Seca3g04646 219 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Seca3g04646 219 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Seca3g04646 219 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Seca3g04646 219 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Seca3g04646 219 FunFam Ethylene-responsive transcription factor 2 23 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04646 Seca-Chr3 90680543 90681202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04646 21 216 AP2-EREBP Transcription Factor Family AT5G44210 48.744 9.72e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g04646 AP2 8.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04646 K09286 - gmx:100775465 247.669