Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04644 ATGAGCAGTATCTATGCAGAGAAACAACACAAACTTCACCCTTCCCATCAACTCCTCTCTCTCAAGAAATCCCTGAGAGACATTGACATTCCACCAAGGAAGCTCCTCATCCGCCGTGCCGCCACCATCAACGACGGTGCCGGTGACATGTTTTCCGATGAAACTCTTTTGCAGAAATATCTTTCTCCCAACAACAGCTCTTATGACTGCGATGATGGTATCGACCCTTACGCCTCCGACCATTTCCGCATGTTCGAGTTCAAGGTCCGGCGATGCACCCGGAGCCGGAGCCATGATTGGACAGACTGCCCCTTTGCTCACCCCGGCGAGAGAGCTCGCCGCCGTGATCCCCGCCAGTTTCACTACTCCGGCGCCATCTGCCCTGAGTTTCGCCACGGTGGTTGTAGCCGTGGTGATGGCTGTGAATTCTCCCATGGCGTTTTTGAATGCTGGTTGCACCCTGCAAGGTACAGGACAGAGCCCTGTAAAGATGGCACAAATTGCAAGAGAAAAGTTTGCTTTTTTGCTCACACACATGAACAACTAAGGGTTTTGCCTCATGATGTGTCATCATGCAATGACAACAAGAGAAAGTGTTGTTTGCTTTGTTGTCTTTGCTCTTCTTCTTCTATTGGTTCCCCAACTTCTACTCTGTTTGGGGTGTCCCAATTTTCTTCTCCTCCTTTGTCACCTTCTCCTTCTTCTCCTTCCCCTAGTGCTCTTTCTAGGTTTGTGGAACATTACAACAATCACATTCTTCATCATAATCATCATGGTGTGGATTTGCTCAATGACCTTGTTTCCTCCTTGGAGGGTCTGAATTTTGGTGAGGCTTCACCTGTTTCTGTTTCCAAACCAGTGAATCTGCCTTGGCTTGAAGATCAGCAGAAGCAGAAGCAGAAGAAGCAGTTGCAGTTTGTTCTTTCACCAACCATGAATTCTAATTCTGAGAGGTTTGTTTCCAATGGGAAATATTCAAGTGGCAAGTTGTTGAGGGAAGAGAGGAAGGTTGTTAATAATGATGATGTCACACCAGCAGCAGCTGCTGCTCTGGATCTTGGATGGGTGAATGATTTGCTGAGGTAG 1086 0.477 MSSIYAEKQHKLHPSHQLLSLKKSLRDIDIPPRKLLIRRAATINDGAGDMFSDETLLQKYLSPNNSSYDCDDGIDPYASDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGERARRRDPRQFHYSGAICPEFRHGGCSRGDGCEFSHGVFECWLHPARYRTEPCKDGTNCKRKVCFFAHTHEQLRVLPHDVSSCNDNKRKCCLLCCLCSSSSIGSPTSTLFGVSQFSSPPLSPSPSSPSPSALSRFVEHYNNHILHHNHHGVDLLNDLVSSLEGLNFGEASPVSVSKPVNLPWLEDQQKQKQKKQLQFVLSPTMNSNSERFVSNGKYSSGKLLREERKVVNNDDVTPAAAAALDLGWVNDLLR. 362
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04644 361 SMART c3hfinal6 156 179 IPR000571 GO:0046872
Seca3g04644 361 SMART c3hfinal6 121 147 IPR000571 GO:0046872
Seca3g04644 361 Gene3D - 122 185 - -
Seca3g04644 361 ProSiteProfiles Zinc finger C3H1-type profile. 122 148 IPR000571 GO:0046872
Seca3g04644 361 PANTHER UNKEMPT FAMILY MEMBER 53 360 IPR045234 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca3g04644 Seca-Chr3 90512605 90513690 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04644 69 232 C2H2 Transcription Factor Family AT5G12850 52.976 1.18e-53 186
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g04644 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04644 K23047 - gmx:100820375 374.015