Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca3g04642 | ATGGAAGATTATTTAGTTTCAGAATTTAAGAAAGAAAAGGAAAAAGAATTAGGTTTGTTTGCTATATTTGATGGCCACTTAGGCCATGATGTTGCAAGCTATTTGCAGAACCACCTTTTTCAAAACATCTTGAAACAGCATGACTTCTGGACTGAAACAGAAAGTGCAGTAAAGAGAGCTTATCTTGAAACAGATGAGAAAATACTAGAACAAGCACTTGTTTTGGGACGAGGAGGATCAACAGCAGTAACTGTAATTTTGATTGAAGGTCAGAAACTTGTAGTAGCAAATGTTGGTGACTCTCGAGCTGTTATTTGTGAGAATGGAAAAGCCAGGCAACTATCAGTTGATCATGAACCAAGCAGAGAAAAAAAATCTATTGAAAGCCGTGGTGGCTTTGTATCAAATATTCCAGGAGATGTTCCTCGTGTAGATGGACAGCTGGCAGTAGCAAGGGCTTTTGGTGACAAGAGCTTGAAGATGCATCTTAGTTCGGAACCTGATGTGGTTGTAGAGGAGGTAGATCAACAACATACAGAGTTTCTTATTCTGGCTAGTGATGGAATATGGAAGGTGATGTCAAACCAAGAAGCAGTGGATTCTATTAGACAAATAAAGGATGCTCAGGCAGCAGCAAAACATTTGATTGAAGAGGCTATTTCCAAGAAAAGTAAGGATGACATATCCTGCATAGTTGTGAAGTTCCAATGA | 711 | 0.3896 | MEDYLVSEFKKEKEKELGLFAIFDGHLGHDVASYLQNHLFQNILKQHDFWTETESAVKRAYLETDEKILEQALVLGRGGSTAVTVILIEGQKLVVANVGDSRAVICENGKARQLSVDHEPSREKKSIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKMHLSSEPDVVVEEVDQQHTEFLILASDGIWKVMSNQEAVDSIRQIKDAQAAAKHLIEEAISKKSKDDISCIVVKFQ. | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca3g04642 | 236 | PANTHER | PROTEIN PHOSPHATASE | 2 | 235 | IPR015655 | GO:0004722|GO:0006470 | |
| Seca3g04642 | 236 | FunFam | Probable protein phosphatase 2C 39 | 1 | 236 | - | - | |
| Seca3g04642 | 236 | CDD | PP2Cc | 1 | 235 | IPR001932 | - | |
| Seca3g04642 | 236 | Pfam | Protein phosphatase 2C | 2 | 228 | IPR001932 | - | |
| Seca3g04642 | 236 | Gene3D | - | 1 | 236 | IPR036457 | - | |
| Seca3g04642 | 236 | SUPERFAMILY | PP2C-like | 1 | 235 | IPR036457 | - | |
| Seca3g04642 | 236 | SMART | PP2C_4 | 1 | 233 | IPR001932 | - | |
| Seca3g04642 | 236 | ProSiteProfiles | PPM-type phosphatase domain profile. | 3 | 235 | IPR001932 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca3g04642 | Seca-Chr3 | 90478358 | 90480808 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca3g04642 | 1 | 236 | PP2C-type Phosphatase Gene Family | AT4G28400 | 77.119 | 2.86e-133 | 374 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca3g04642 | K17506 | - | gmx:100819846 | 401.749 |