Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04639 ATGCCTGCTCAGAAGCGTTCCTTCCCCGACTCTCTGCACGATCACCATCGCCATGCCAAGCAATCCAACGACGAACAACACCAAGATGAAGAAGATGATTATGATAAATCAGATGGTTCTGACCACCATACCCCATCTTCTGCCTCTGAAGAAAAGCCCGAATTTGTGTTTGTAGAACTTCTGGAAATTCGTAAAGATGTCCAGTGTCCAATTTGCCTTGGTATTATTAAGAAAACACGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCCATGCGACTAGGGAACAATGAATGCCCTGCTTGTCGCACGCACTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTACGATGCCCTAATTGCAGCTTTATATCCAGATATCGAGAAGTATGAGGAAGAGATTCAAGCTTCAATTGCAAAAGTTGTTCAACGGCAATCTGAAGCACTGGTTAAGAGACGTAGAGATACACCAGGTGCATTTGTGACAATGGCACAGCGCAAACAACGAAATGTTCTTTCTAGGAGACAAAACCAAGTGAATGATACTCAAGGATCTGAAGATAATGAGGAGGAAAATGACAATAATGAAAAGGACTCATCTTCAGCAGATGAGCGATGTACAGAACTCAGGCAGAGAACGCGGAAGAGGCGGACCAGAGCTCGCCCTTCTCAGCCCTCATCATCAACAGCAAGTCCTGATGGTGGATGCATAGAAAGTGATATGGATATAAGTAGAGAAAATAGAGGATTTTCTTCAAGGCAGGTGTCAAAACCTCAAAAACTTACTTGGGGAAGGGGTGGTTTTAGGAGTCACACAAGGCATGGCGGTGGCAATGGTAGCAATAGCAAAAGTTCCCGCAATGGTCGCCTGACTAAATTGGTTGATTATCTCCGTAACTTGGATGAAAACACCAACACTGATGAGTTAGATGTCCATCTCATGCTTTTTTCTTTGGACAAACAAAGCATCCCAAGTTTGCAGCATCCACACCTTAGCTGTCGGCCAACTTTGTCTGTGAAGCACCTTTGTGAATATGTTGCTTGTCAGATACCTTTGCCAGTTGAAGAAGTTGAGATATTGGCAGTTAAAGGATGCTGCAGTACATTTTGTGACAAGTCAGTTGATGAGACTCCTTCCTTTGATGAGCTTACAACACTGGTTATAGATCCTAGCAAAGATGAACTGGAAACTTTGCAAGGGGATGAATCTTTGGCAGGGATTAAGTCCAAATGCATATCTAAAAGGGAGCATTTAATTCTGGCATACAGGCGGAAGGAGTGA 1305 0.4383 MPAQKRSFPDSLHDHHRHAKQSNDEQHQDEEDDYDKSDGSDHHTPSSASEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEIQASIAKVVQRQSEALVKRRRDTPGAFVTMAQRKQRNVLSRRQNQVNDTQGSEDNEEENDNNEKDSSSADERCTELRQRTRKRRTRARPSQPSSSTASPDGGCIESDMDISRENRGFSSRQVSKPQKLTWGRGGFRSHTRHGGGNGSNSKSSRNGRLTKLVDYLRNLDENTNTDELDVHLMLFSLDKQSIPSLQHPHLSCRPTLSVKHLCEYVACQIPLPVEEVEILAVKGCCSTFCDKSVDETPSFDELTTLVIDPSKDELETLQGDESLAGIKSKCISKREHLILAYRRKE. 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04639 434 ProSiteProfiles Zinc finger RING-type profile. 69 109 IPR001841 -
Seca3g04639 434 Pfam Zinc finger, C3HC4 type (RING finger) 68 108 - -
Seca3g04639 434 MobiDBLite consensus disorder prediction 36 51 - -
Seca3g04639 434 MobiDBLite consensus disorder prediction 174 191 - -
Seca3g04639 434 SMART ring_2 69 108 IPR001841 -
Seca3g04639 434 MobiDBLite consensus disorder prediction 167 295 - -
Seca3g04639 434 MobiDBLite consensus disorder prediction 1 51 - -
Seca3g04639 434 CDD RING-HC_RING1-like 66 131 - -
Seca3g04639 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 138 IPR013083 -
Seca3g04639 434 SUPERFAMILY RING/U-box 55 141 - -
Seca3g04639 434 Coils Coil 135 155 - -
Seca3g04639 434 PANTHER OS11G0578200 PROTEIN 16 433 IPR044592 -
Seca3g04639 434 MobiDBLite consensus disorder prediction 8 27 - -
Seca3g04639 434 ProSitePatterns Zinc finger RING-type signature. 85 94 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04639 Seca-Chr3 90426339 90434315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04639 67 232 C3H Transcription Factor Family AT2G30580 26.437 2.00e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04639 K10695 - gmx:100819311 649.047