Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04630 ATGGCTTCTTATTCCTTCACCACTTGTGTGTTATTCCTCTTTTTCCTGCATTTGTCTTGTTTCTTGAACAACCTCAATGCAAAGCACAGCATTGCCACCAGTCACAAGCACCAGAACAGGCACAAACATACCCATAATCCACCAATAAACCCAAGGCTTTACCGTGCTTTTCTTGCACTCCAAGCATGGAAGCATGTGATCTACTCAGACCCAAATAACTTCACTGCCAATTGGGTAGGTCCTTCAGTTTGCAACTATACTGGTGTCTACTGTGCTCCATCTCCTGATGATCCTAAAGTGACTGTTGTGGCTGGCATTGACCTTAACTTTGGAGACATAGCTGGTTTCCTACCAAATGAAATAGGCCTACTCTCTGACCTTGCACTCCTCCACCTCAATAGCAACCGCTTCTGTGGCATCATTCCAATGACCTTTAGCAACCTTACTCTACTCTATGAGCTTGATCTTAGTAACAACAGATTTGTTGGACCTTTTCCTTTAGTTGTGCTTTCCCTTCCTATGCTCAATTATCTTGACATCCGCTACAATGAATTTGAAGGGCCATTGCCTCCTCAACTTTTCAACAAAACTTTTGATGCTATTTTTCTTAATAACAACCGCTTCACCAGTTCTATTCCACCAAATTTTGGCCAAAGTTCAGCTTCTGTCCTGGTCTTTGCTAATAACAAATTTGGAGGCTGTCTACCAGAAAGCATAGTAAACTTTGCTAATACTTTGGAAGAACTTGTCCTGATCAATACCAGCTTGTCAGGTTGTTTGCCACAGCAAGTTGGGTTTCTCTACAAATTGAGAGTGTTGGATGTGAGTTTCAACAATATTGTTGGCCCTATACCTTACAGCTTAGCAGGGTTGTCTCATTTGGAGCAGCTGAATTTGGGCCATAATATGATGAGTGGCATAGTCCCTATGGGGGTTTGTGAGTTGCCAAACTTGGCAAATTTCACTTTTTCTTATAACTTCTTCTGTGAGGAAGAGGGTATTTGTCAGAATTTGACATCAAAGAGGATAGTGTTTGATGATCGAAGGAACTGTTTGCCAGATAAACCACTGCAAAGGAGCCAAAAGGAATGCAAAGCCAAACTTGAGCACCCAGTTGATTGTGCTGAGCTTTGCTGTCTTGTTGGTGGTTCTGGGAACAATGCCACTTCTGGTTCAGTGGCTATCCCACCTGCTGCAATTCCAGCAGCAATGCCTGTTTCTGCACCTCTTCTTGCACCAAGCTACCCTTGA 1251 0.4301 MASYSFTTCVLFLFFLHLSCFLNNLNAKHSIATSHKHQNRHKHTHNPPINPRLYRAFLALQAWKHVIYSDPNNFTANWVGPSVCNYTGVYCAPSPDDPKVTVVAGIDLNFGDIAGFLPNEIGLLSDLALLHLNSNRFCGIIPMTFSNLTLLYELDLSNNRFVGPFPLVVLSLPMLNYLDIRYNEFEGPLPPQLFNKTFDAIFLNNNRFTSSIPPNFGQSSASVLVFANNKFGGCLPESIVNFANTLEELVLINTSLSGCLPQQVGFLYKLRVLDVSFNNIVGPIPYSLAGLSHLEQLNLGHNMMSGIVPMGVCELPNLANFTFSYNFFCEEEGICQNLTSKRIVFDDRRNCLPDKPLQRSQKECKAKLEHPVDCAELCCLVGGSGNNATSGSVAIPPAAIPAAMPVSAPLLAPSYP. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04630 416 Gene3D Ribonuclease Inhibitor 57 221 IPR032675 -
Seca3g04630 416 Pfam Leucine rich repeat N-terminal domain 58 91 IPR013210 -
Seca3g04630 416 SUPERFAMILY L domain-like 57 348 - -
Seca3g04630 416 Pfam Leucine rich repeat 269 326 IPR001611 GO:0005515
Seca3g04630 416 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 381 - -
Seca3g04630 416 Gene3D Ribonuclease Inhibitor 222 361 IPR032675 -
Seca3g04630 416 FunFam Leucine-rich repeat extensin-like protein 1 57 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04630 Seca-Chr3 90270896 90272146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04630 50 379 Leucine-rich Repeat extension Gene Families AT3G24480 56.495 8.54e-136 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04630 - - gmx:100782629 712.605