Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04629 ATGGAGCATAGCAACACCCAGTCTGTAAGAAATTGCTTTAGAATACCTTTGCAGGGTGCTGCTAAGGTTTCAATAATAATGATTGGTCAGCAAGCTATAGTGGATGCTTATCTTTGCCTTATACATCTGACTGCAGGAATACTAGTTGAATCCTTGTTCAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTGGTTTTCTCGATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAGGCCTTTGAGTAATGGTGAAGGTTGGGAGACAATGAGGCGTGAGCTTTCAGTTTTATACAGCCGTTTCTATGGGATCCTGTTGGGAGGCATTCTGCTTATGTATGAGTTCCATAATTATATGAGACCTATTCTTCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAATGTTGTTCGTGATTCACGCAAACCATTGCATCCCCATTATATATTAGGCATAACCGTTACACGGCTAGCAATCCCATTATATATTTTTGGTTGTCCTGGCAACTTCTTGCGCATAGAACCAGATCAGAGCTGGTGTGCTTGTTTGGCTTTATTTATTGGACTTCAAGCTGCAATTCTCCTTCTTCAGCACTATCTTGGGTCCCGTTGGTTCATTCCTCATCAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTTCTCTCAAGATACAAGTCATGCCACGGACTGTGTTATTTGCATGACAGCCATTGATCTTACGCCACGATCTAATGATTGCATGGTGACACCTTGTGATCATTTTTTCCACTCTGGCTGTTTACAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCCCACTTCCACCTGCATGA 864 0.419 MEHSNTQSVRNCFRIPLQGAAKVSIIMIGQQAIVDAYLCLIHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYMRPILLLVYSFWIPQIITNVVRDSRKPLHPHYILGITVTRLAIPLYIFGCPGNFLRIEPDQSWCACLALFIGLQAAILLLQHYLGSRWFIPHQILPEKYSYYRRFSQDTSHATDCVICMTAIDLTPRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04629 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 223 287 IPR013083 -
Seca3g04629 287 FunFam E3 ubiquitin-protein ligase, putative 223 287 - -
Seca3g04629 287 ProSiteProfiles Zinc finger RING-type profile. 237 281 IPR001841 -
Seca3g04629 287 Pfam Ring finger domain 236 281 IPR001841 -
Seca3g04629 287 SUPERFAMILY RING/U-box 219 286 - -
Seca3g04629 287 SMART ringv_2 236 281 IPR011016 GO:0008270
Seca3g04629 287 SMART ring_2 237 280 IPR001841 -
Seca3g04629 287 PANTHER RING ZINC FINGER PROTEIN 19 286 - -
Seca3g04629 287 CDD RING-H2_TUL1-like 231 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04629 Seca-Chr3 90263940 90267929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04629 237 284 C3H Transcription Factor Family AT4G12190 39.583 2.39e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04629 K23788 - gmx:100780140 521.931