Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04625 ATGTCGCTGCAGGCTCTGAAGGAATCTCTGAGACCCTGCACTACCCAACAATCACAACCACCTTCTTCATCTTCATCTTCATCTTCAATTCTCCGCGCTTGCGATTCCCACTTCCCAATCACTAGAAAACCCCCTAAATCCTCTCTTTCCCACCAGCTTCTCCGTCTTCAAGACCCCCCGCTTCATCCCCATGATTCCATTAAGCCACAAAGGGACTCCAAAACCCAACAAGAGAAACAACAAGAACGAGAACAAGAAGACGAAAAAGAAGAACCAGAGGTGAAGAGGGCCAAAATCGGTACAGAAAAATCGTCCCAGTTTCAATTTGATCACACTGGACCCTTTGAGCCTCTGATATTGTCTTCACAAGGAGAAGTACCCGTGGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGTGGGAGTAAGGTTTCTGTATGGTTTGTACAAGAACAATCATGGAGGCATCCTCGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCCATTTTCGGTAAAGAAGGGGAGTCTATTCTAAGTGAAAACCGGGGAGAGAAAAGAGACCCTGTATTAATTATTTGCCCAACATCCGTTATTCACAACTGGGAGAATGAATTCTCTACGTGGGCTAACTTCAGTGTTTCCATTTATCACGGTGCAAATCGGGATCTGATATATGATAAATTGGAAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACTTACAGGATTCATGGCAGTTCTTTGTCTGATATCAACTGGAATGTTGTGATTATTGATGAGGCTCATCGACTTAAGAATGAGAAATCAAAACTCTATAAAGCATGTCTAGAAATTAAAACCTTGAGACGCTATGGTCTTACTGGGACCATAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGACTGGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGAATTCTATGATGAACCCCTTAAGCATGGCCAGAGATCAACTGCTCCAGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTGGCAGTTCTTCATAAATATTTGTTGAGAAGGACTAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGTGCAATGAGTGATCTGCAAAAACGTGTTTACAGGAGAATGTTACAGCTTCCTGATATTCAATGCCTTATAAATAAGGACCTGCCATGTAGTTGTGGTAGCCCTCTTACTCAAGTTGAATGCTGTAAAAGGATAGTACCAGATGGAGTTATTTGGCCTTACCTTCACAGAGACAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGTCTTGTCAAGCTCCAGCAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCGAAAGATGACCCTGACAAACAAACTAAAGATGCAGAGTTTTCTGCTGCTGTCTTTGGCCCTGATATTGATTTAGTGGGTGGGAACATGCAGAATGAGAGTTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAAAAACTAATGTTCTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGTTCCACTCCGACTAATTTACGTCAGTCTCTGGTTGATGATTTCAATTCAAGTCCAAGTAAACAAGTATTCCTGATATCAACTCGTGCTGGGGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGGTTTGGACAGAAGCGGCATGTTTTGGTGTTCCGTCTTCTAGCAGCTGGTTCACTTGAAGAATTAGTTTATTCTCGTCAGGTTTACAAGCAGCAACTCTCAAACATTGCTGTCTCTGGGAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGTACCAGATTCTATATATTTTGATTTTGCATTTCTTTTCAGTTGTTTCTTAATATAA 2121 0.4201 MSLQALKESLRPCTTQQSQPPSSSSSSSSILRACDSHFPITRKPPKSSLSHQLLRLQDPPLHPHDSIKPQRDSKTQQEKQQEREQEDEKEEPEVKRAKIGTEKSSQFQFDHTGPFEPLILSSQGEVPVVQVPASINCRLLEHQRVGVRFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAIFGKEGESILSENRGEKRDPVLIICPTSVIHNWENEFSTWANFSVSIYHGANRDLIYDKLEANGVEILITSFDTYRIHGSSLSDINWNVVIIDEAHRLKNEKSKLYKACLEIKTLRRYGLTGTIMQNKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLHKYLLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQTKDAEFSAAVFGPDIDLVGGNMQNESFMGLSDVKHCGKMRALEKLMFSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVLVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKMEKRYFEGVQVPDSIYFDFAFLFSCFLI. 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04625 706 Pfam Helicase conserved C-terminal domain 528 640 IPR001650 -
Seca3g04625 706 SMART ultradead3 135 330 IPR014001 -
Seca3g04625 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 683 IPR027417 -
Seca3g04625 706 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g04625 706 Gene3D - 117 371 IPR038718 -
Seca3g04625 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 372 IPR027417 -
Seca3g04625 706 Pfam SNF2-related domain 156 412 IPR000330 GO:0005524|GO:0140658
Seca3g04625 706 Coils Coil 71 91 - -
Seca3g04625 706 Gene3D - 384 691 IPR027417 -
Seca3g04625 706 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 322 IPR014001 -
Seca3g04625 706 MobiDBLite consensus disorder prediction 1 107 - -
Seca3g04625 706 CDD SF2_C_SNF 522 651 - -
Seca3g04625 706 MobiDBLite consensus disorder prediction 61 100 - -
Seca3g04625 706 SMART helicmild6 557 640 IPR001650 -
Seca3g04625 706 PANTHER SNF2/RAD54 FAMILY MEMBER 20 691 - -
Seca3g04625 706 FunFam Switch 2 121 371 - -
Seca3g04625 706 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 684 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04625 Seca-Chr3 90228648 90234921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04625 158 693 RAD5 or RAD16-like Gene Family AT5G05130 26.045 1.24e-37 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g04625 SNF2_N 8.4e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04625 K20098 - gmx:100781003 1200.27