Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04611 ATGGAGTCTCAGATGTTCCATTGTAATCTTATTCTTCTTGTTCTCTTTTTTATGTCATTCCAATTCCAGCTATCTGTTGGATCTGATAGATTCATCCCGGGCCAAACTCTAGCAGGTAACCACACTCTAATTTCCAAAGGTGAATTATTTGAAATGGGTTTCTTTGCACCACCGGGTAACTCTCACAAATTCTATATAGGAATATGGTACAAAGAGCCTCCACAGATAGAAAAAACAGTGGTATGGGTGGCCAACAGGGACCATCCTGTATCTGATCCATATTCTTCATGGTTGGCACTTGGTCACAATGGTCATCTAGTTCTACGCAACTCAGCTGGTCTTGCAGTTTGGTCAACAGGTTCTAACTCCAATGCATCTCCATTGAATTCAACAGTTGCTACCCTTGGTGATAATGGAAACTTAATTATAACAGGAAGATCAAATCCTATTTTGGATAAGGAAGAGAGAAAGATATGGCAGAGCTTTGACCACCCAACAGATACTTGGTTGCCTGGTGCAAATTTCGGATATGGTAAGAATGCAGGTATGAAAAGAAAAACTATATTAACATCATGGAAAGATACAAGTGATCCTGCAACTGGCATCTTCTCTGCTGAGGTTTATCAAATTCACCCTTATCAATCTCAGGTTCAGATCTTGCTAAAGAATGGTTCTGATGAGTATAAATTCTGGTTTGATAAAGATGGCATTAGTTTTGGATTTATATATGGATGCAGTTCAAACTACTCAGTTAATGACAATACGATTGTGTATTCGTTAGAAAGCCCCAGCTATTGTCTCCTGAGATATGTGCTGGACATGACAGGGCAATTGAAGCTGTTTATACGGTGGAATAATGATACTTCATTTGAAAGATGGCATTTGGTTTCAACACAACCACCACAAACGCAAGACTCACATGGAGGAAATAAAAGGGGCAATACAACAGAAAATGGGGGAAATATTGGAAAAAAGAATGCTACTTGGATTGTTGCTATAGTAACATCAGCATTACTTGCTCTTTTGTTTGTTGGCCTTACTGTTTTACTGAGAATTGCAAGGAGGAAAGGCTCTGGCACTTCATTTGTGTCACCGGGAGGGGATGCATTGAGGCAATACAAGCACCAAGATTTGCAGAGGGCAACCAAAAACTTCACACAGAAACTTGGGGAGGGAGGTTTTAGCACAGTTTACAAAGGGGAATTCTCAGACTCAACTTTCATAGCTGTGAAAGAACTTAAAGGCTCATTTCAAAAAGATAAACAGCTTAAAGCAGAACTCAACACAATCGGATTGATCCAGCACAGAAATCTTGTACGCCTGTGTGGCTTTTGTTTGGAACATTCAAAAAGATTCTTGGTCTATGATTACATGCCAAATGGTTCTCTAGAATCTCATCTATTCCAAAAGGGTTGTTCTGATGTTTTGGATTGGGGAACAAGATATAATATTGCTCTTGGGACTGCCAGAGGTTTAGCTTACCTACATGAAGAGTGTAGAGACTGCATCATACATTGTGACATCAAGCCAGAGAATATTTTGTTGGACGCTGAGTTTAATCCAAAGGTTGCTGATTTTGGCTTAGCAAAGCTTTTAAACAGAAACTTCAGCAGGGCTCTTACCACCATGAGAGGAACCAGAGGCTATCTTGCACCAGAGTGGTTTTCTGGTGGACCTGTCACTGCAAAAGTTGATGTGTACAGCTATGGACAGGTTCTTTTTGAGATCATTTCAGAAGGTGAGCTCAATGTGGAAGAGCTAACTAGAGCATGCAAGGTTGCCTGCTGGTGCATTCAAGATCATGAGACAGACAGACCAACCATGACACAGGTGGTTCAAATTTTGGAAGGGCTTCTTGATGTAGATATCCCTCCTATTCCACGGTTTTTCCAGTCCATTGCAGAAGTTCCCATGAATGAAAGTGATATCAAGCGAAGTGAGGCTTATAGTACTTCGAGTACACTACCAGCAAGTTTTACCTTTCAACCTTGA 1992 0.4056 MESQMFHCNLILLVLFFMSFQFQLSVGSDRFIPGQTLAGNHTLISKGELFEMGFFAPPGNSHKFYIGIWYKEPPQIEKTVVWVANRDHPVSDPYSSWLALGHNGHLVLRNSAGLAVWSTGSNSNASPLNSTVATLGDNGNLIITGRSNPILDKEERKIWQSFDHPTDTWLPGANFGYGKNAGMKRKTILTSWKDTSDPATGIFSAEVYQIHPYQSQVQILLKNGSDEYKFWFDKDGISFGFIYGCSSNYSVNDNTIVYSLESPSYCLLRYVLDMTGQLKLFIRWNNDTSFERWHLVSTQPPQTQDSHGGNKRGNTTENGGNIGKKNATWIVAIVTSALLALLFVGLTVLLRIARRKGSGTSFVSPGGDALRQYKHQDLQRATKNFTQKLGEGGFSTVYKGEFSDSTFIAVKELKGSFQKDKQLKAELNTIGLIQHRNLVRLCGFCLEHSKRFLVYDYMPNGSLESHLFQKGCSDVLDWGTRYNIALGTARGLAYLHEECRDCIIHCDIKPENILLDAEFNPKVADFGLAKLLNRNFSRALTTMRGTRGYLAPEWFSGGPVTAKVDVYSYGQVLFEIISEGELNVEELTRACKVACWCIQDHETDRPTMTQVVQILEGLLDVDIPPIPRFFQSIAEVPMNESDIKRSEAYSTSSTLPASFTFQP. 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04611 663 Pfam D-mannose binding lectin 79 193 IPR001480 -
Seca3g04611 663 FunFam Protein kinase superfamily protein 458 531 - -
Seca3g04611 663 MobiDBLite consensus disorder prediction 297 320 - -
Seca3g04611 663 FunFam S-receptor-like serine/threonine-protein kinase 354 457 - -
Seca3g04611 663 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Seca3g04611 663 CDD B_lectin 35 165 IPR001480 -
Seca3g04611 663 Gene3D - 24 163 IPR036426 -
Seca3g04611 663 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 198 IPR036426 -
Seca3g04611 663 Gene3D Transferase(Phosphotransferase) domain 1 458 622 - -
Seca3g04611 663 SMART serkin_6 383 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04611 663 Pfam Protein kinase domain 386 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04611 663 ProSiteProfiles Bulb-type lectin domain profile. 28 156 IPR001480 -
Seca3g04611 663 Gene3D Phosphorylase Kinase; domain 1 352 457 - -
Seca3g04611 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Seca3g04611 663 SUPERFAMILY Protein kinase-like (PK-like) 370 641 IPR011009 -
Seca3g04611 663 SMART blect_4 34 165 IPR001480 -
Seca3g04611 663 CDD STKc_IRAK 389 618 - -
Seca3g04611 663 PANTHER OS07G0415500 PROTEIN 10 299 - -
Seca3g04611 663 ProSiteProfiles Protein kinase domain profile. 383 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04611 Seca-Chr3 90046309 90048621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04611 361 625 Receptor kinase-like Gene Family AT5G20050 37.421 1.59e-62 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca3g04611 Pkinase 5.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04611 - - ahf:112737678 716.072