Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04606 ATGGATTGTGTAGTTTATTTTTCGGAGTTTGAAGATGGGGAAATGGGTCAGGTCCTTCCCAAATGCAACCACAACTTCCACATTAACTGCATCGACATGTGGTTCCAGTCTCACTCCACCTACCCGCTTTGTACGGCACTCGTGAAGCCTCCACTCGGTGGAGAGATCCAACCTGAAGTGACTGTAACGGAACAAGGTTCGAGTTTCGAGTTGTGA 216 0.4815 MDCVVYFSEFEDGEMGQVLPKCNHNFHINCIDMWFQSHSTYPLCTALVKPPLGGEIQPEVTVTEQGSSFEL. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04606 71 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 48 IPR013083 -
Seca3g04606 71 Pfam RING-H2 zinc finger domain 15 44 IPR024766 GO:0008270
Seca3g04606 71 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 2 67 - -
Seca3g04606 71 SUPERFAMILY RING/U-box 3 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04606 Seca-Chr3 89949789 89950004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04606 1 54 Rapid Response to Elicitors AT4G15975 57.407 3.61e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04606 - - pavi:110750264 87.4261