Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04604 ATGGGTTGCATATGTTCCAAGAGTTCAGCTGTAGAAGACAGCAAAGAGGATATCACAAAGAAATTGCAATCATGTAGCACAAGGCCTTCAGAGTTGAATGTTTTGAGATTGAATTCCAGCAAGAGGGTTGAGGGGGGTCGGGTGAAAGATACGCCATTAGGTCGAGGTGATGTGAAAGCTTCATTGATTGTTGACAAGAAAGTCAATGACTCAGTGCAATTGTATGTTGATCCAAATGGGAAGAAGAAAATAGAGAAGCCTGAATTGACTGTTATTGATCATCCTGGCCTTGGAAGGGTTCCAAAGGCTGCAGAAGGAGAGCAAGTTGCAGCAGGATGGCCGGCTTGGCTTTCTTCTGTTGCTGGGGAAGCTATCAAGGGATGGATACCACGGAGTGCAAATTCTTTTGAGAGGTCACATAAAATTGGCCAAGGAACTTATAGTACTGTTTATAAGGCACGTGATGTGACTAATCAAAAGATTGTTGCATTGAAGAGGGTGCGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCATGTCCTGCGTAGACTCAACCATCCAAATATAATAAAGTTGGAGGGCTTGATAACTTCAGAGACGTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGATCTTACAGGACTTGTATCGAATCCTAGCATTAAGTTCTCTGAACCACAGCTGAAATGCTACATGCAGCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGCGACATAAAGGGCTCAAATCTTCTCATTGACAACAATGGTGTCTTAAAGATTGCTGATTTTGGTTTGGCAAGTTTTTTTGATCCCAGTCATAGTATTCCATTGACAAGCCGTGTTGTAACTCTGTGGTATAGACCACCTGAACTTCTACTCGGAGCAAATCATTATGGGGTTGCAGTGGATTTATGGAGCTCTGGTTGCATACTGGGGGAACTATATACTGGGAGGCCAATTTTGCCAGGAAAAACAGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGTGGCTCGCCATCTGAGGACTATTGGCTTAAATTGCGATTGCCACATTCAACAGTATTCAAGCCTCCACACCATTATAGGCGATGTGTTGCTGAAACATTTAAGGAATACCCTTCTACTGCTATTAAGCTTATAGAGACCCTACTTTCAGTAGATCCAGCACATCGAGGGACAGCTGCTGCTGCTCTGAAAAGCGAGTTCTTTACATCGGAACCTCTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCCAGCAAGGAGATTGATGCTAAATTGCGGGATGAAGCAACCAGAAGGCAAGGAGCTGTGGGAGGCAGGGAGCAAAAAGTTGGCTCAGGAGTTAGGCAAGAAAAAGGACATAGGGCCTATGCCACAGCAAAAGACAATGCTGACCCAGGCATATCAATGCAGGTAAGAATCGGAATGCAGCAAGCGCAACGTTATTCCAGCTCAAAGAATCGGAGTGAATTGTTCTACACTCACAGAGAACCTGTGTCTGGGCACAAACAGTCTGAAGATGTTAAAGAAATGGACAATTATTTCTCTGGGCATCTTTATAAGAAGCCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGGCTGGGCAAGGGCTGGGAAGGAAGTTGATGATGGACCTCCTGTTTCAAACAGAGTGAACCTATCAAAACTATCTGGGCTAGTGGCATCTAGGACTTTGTTGTCTGAAGACCAGGAGGAAAAACCAGTTCACTTGCACCACAGAAAACCAATTGAAGTAAGAAAATCCGGGGAGGCAACTAATGGATCAGAGTCAAGAAGAAGGCAGGATCAAAAACGGATGGTTGATCTCGGTCAAATGGAAAATAGAAGGGTCCCCACTGAAAAGTCAACTCCGGATGGGCATGGGTCCAGGGGAAACAAGATATACCTCTCTGGTCCTTTACTGGTTCAATCAAGCAACATGGATCAGATGCTCAAAGAGCATGATCGAAAGATCCAGGAGTTTTCAAGACGAGCAAGAATTGACAAGTCCAGAGCAAGAGGTGAGAAAGTCCGTGCACAGAGAAAGTAG 2109 0.4429 MGCICSKSSAVEDSKEDITKKLQSCSTRPSELNVLRLNSSKRVEGGRVKDTPLGRGDVKASLIVDKKVNDSVQLYVDPNGKKKIEKPELTVIDHPGLGRVPKAAEGEQVAAGWPAWLSSVAGEAIKGWIPRSANSFERSHKIGQGTYSTVYKARDVTNQKIVALKRVRFDNLDPESVKFMAREIHVLRRLNHPNIIKLEGLITSETSRSLYLVFEYMEHDLTGLVSNPSIKFSEPQLKCYMQQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDPSHSIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSSGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVAETFKEYPSTAIKLIETLLSVDPAHRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKLRDEATRRQGAVGGREQKVGSGVRQEKGHRAYATAKDNADPGISMQVRIGMQQAQRYSSSKNRSELFYTHREPVSGHKQSEDVKEMDNYFSGHLYKKPSHSGPLVPGSGWARAGKEVDDGPPVSNRVNLSKLSGLVASRTLLSEDQEEKPVHLHHRKPIEVRKSGEATNGSESRRRQDQKRMVDLGQMENRRVPTEKSTPDGHGSRGNKIYLSGPLLVQSSNMDQMLKEHDRKIQEFSRRARIDKSRARGEKVRAQRK. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04604 702 FunFam probable serine/threonine-protein kinase At1g54610 219 460 - -
Seca3g04604 702 MobiDBLite consensus disorder prediction 585 661 - -
Seca3g04604 702 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04604 702 SMART serkin_6 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04604 702 PANTHER CELL DIVISION PROTEIN KINASE 134 426 - -
Seca3g04604 702 FunFam probable serine/threonine-protein kinase At1g54610 123 218 - -
Seca3g04604 702 CDD STKc_CDK9_like 136 420 - -
Seca3g04604 702 MobiDBLite consensus disorder prediction 678 695 - -
Seca3g04604 702 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
Seca3g04604 702 SUPERFAMILY Protein kinase-like (PK-like) 129 428 IPR011009 -
Seca3g04604 702 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Seca3g04604 702 MobiDBLite consensus disorder prediction 586 647 - -
Seca3g04604 702 Pfam Protein kinase domain 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04604 702 Gene3D Transferase(Phosphotransferase) domain 1 219 457 - -
Seca3g04604 702 MobiDBLite consensus disorder prediction 678 702 - -
Seca3g04604 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Seca3g04604 702 MobiDBLite consensus disorder prediction 451 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04604 Seca-Chr3 89907351 89913640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04604 128 463 Core Cell Cycle Gene Families AT5G10270 48.580 8.97e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca3g04604 Pkinase 2.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04604 - - gmx:100807590 1148.65