Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04600 ATGGCGTCTGGATCGTCCGGTCGCGGTAACTCCGGCTCGAAAGGCTTCGATTTCGGTTCCGATGATATCTTGTGCTCCTACGAAGACTATTCCAACAGGGATTCAAATTCCAATGGCAATCACACCGATCCGGTCATTGCCCCCAATTCAACTAAGGATTATCACAAATCAAGGGTGGCAAGGACATCAATGTTTCCCACTACTGCCTATAATCCACCTGAAGATTCTTTTAGCCAAGATGTGATTGCAACTGTAGAGAAAAGTATGAAGAAGTATGCTGACAACCTCATGCGGTTTCTTGAGGGAATTAGTTCAAGGCTATCACAGTTGGAATTATATTGCTACAATCTTGACAAATCTATTGGAGAAATGAGATCTGATTTAAATCGTGACCACGGGGAGCAAGATTCAAAGCTCAAATCTCTTGAAAAGCACCTTCAAGAAGTTCACAGGTCTGTACAAATTTTAAGAGACAAGCAAGAGCTAGCTGACACTCAGAAAGAATTAGCCAAGCTTCAACTTGCTCAGAAAGAATCATCTTCCTCAAGCCATTCACAGCCCAATGAGGACAGATCACCTTCTACCACAGATCCTAAAAAAACTGATAATGCATCTGATGCACACAACCAGCAGTTAGCTCTTGCCCTTCCTCATCAAATTGCCCCTCAGCCGCAGCCTGCACCACCCCCAACCCAAGCTCCTGCACCGAATGTGACTCAAGCCCCTCAACAACCTGCTTATTACATGCCACCCGCCCCTTTGCCTAATCCACCAGCCATGGCCCAGGTCCCCCAGAATCAGTATTTACCTTCTGATCAACAATATCGAACACCCCAATTACAAGACATGTCCCGGGTGGCTCCACAACCAGCACCTTCTCAAGTGACCCCTCCCCCACCGGTGCAGCAATTTTCTCAGTATCAGCAGCCACAGCCACAGCCGCAGCCCCAGCAACAGCAGCAGCAGCCACAGCAATGGCCCCAGCAGGTACAACCTCCACAACCACCCTCATTGCAAGGTCAAATAAGACCCCCCTCCTCAACTGTGTATCCTCCATACCAGCCAAATCAAGCAACAAATTCATCACCCACAGAAACACTGCCAAACAGCATGCCAATGCAAATGCCATATTCAGGGGTTCCGGTTCCACCTCCAGGATCTAGCCGTGCTGATACCATACCATATGGATACGGAGGAAGTGGTGGTAGACCAGTTCCTCAGCAACCTCCACCCCAGCAAATCAAGAGCTCTTTCCCTGCTCAACCAGGTGACGTATATGGAACTAGTGGGACACACCCAGCACTTCCTCCTCCTGGCAATGCATACATGATGTATGATAGTGAGGGAGGAAGAACACATCACCCACCCCAGCAACCTCCTCATTTTGCTCAAGCTGGATATCCTCCAACAAGTGCTTCCCTTCAGAACCCAACAGGTCACAATCTTATGGTCCGAAATCCTAGCCAGTCACAATTTGTACGCAACCATCCCTACAGTGAGTTGATTGAGAAATTGGTGAGCATGGGATTCAGGGGTGACCATGTGGCAAGTGTGATCCAAAGGATGGAAGATAGTGGACAGCCTATAGATTTCAACTCTGTACTTGACAGGTTGAATGTGCATAGCTCTGTGGGTCCCCAGAGAGGATGGTCAGGGTGA 1659 0.4846 MASGSSGRGNSGSKGFDFGSDDILCSYEDYSNRDSNSNGNHTDPVIAPNSTKDYHKSRVARTSMFPTTAYNPPEDSFSQDVIATVEKSMKKYADNLMRFLEGISSRLSQLELYCYNLDKSIGEMRSDLNRDHGEQDSKLKSLEKHLQEVHRSVQILRDKQELADTQKELAKLQLAQKESSSSSHSQPNEDRSPSTTDPKKTDNASDAHNQQLALALPHQIAPQPQPAPPPTQAPAPNVTQAPQQPAYYMPPAPLPNPPAMAQVPQNQYLPSDQQYRTPQLQDMSRVAPQPAPSQVTPPPPVQQFSQYQQPQPQPQPQQQQQQPQQWPQQVQPPQPPSLQGQIRPPSSTVYPPYQPNQATNSSPTETLPNSMPMQMPYSGVPVPPPGSSRADTIPYGYGGSGGRPVPQQPPPQQIKSSFPAQPGDVYGTSGTHPALPPPGNAYMMYDSEGGRTHHPPQQPPHFAQAGYPPTSASLQNPTGHNLMVRNPSQSQFVRNHPYSELIEKLVSMGFRGDHVASVIQRMEDSGQPIDFNSVLDRLNVHSSVGPQRGWSG. 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04600 552 Coils Coil 139 175 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 246 260 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 341 373 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 29 47 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 173 192 - -
Seca3g04600 552 PANTHER RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED 3 552 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 261 290 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 449 480 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 221 236 - -
Seca3g04600 552 Pfam UBA-like domain (DUF1421) 498 542 IPR010820 -
Seca3g04600 552 MobiDBLite consensus disorder prediction 29 53 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 173 205 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 291 305 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 306 327 - -
Seca3g04600 552 MobiDBLite consensus disorder prediction 220 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04600 Seca-Chr3 89847943 89853840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04600 85 183 Trihelix Transcription Factor Family AT3G01560 36.364 5.34e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04600 - - adu:107478128 663.685