Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04592 ATGGCCTTAGATCAGTACTTGGAGGAGACTGCATCCCAAATTGATTCCTTCCAAGAAAAACCATCTTTGGAGAAGTGGAAATCCTCCAGTAATGTCATTGCAGATTCTGATAAAAAAGCCTCTAGTGGCTTTGATTGCAACATCTGTCTGGACTCTGTGCAAGATCCAGTCGTGACTCTTTGTGGTCATCTTTACTGCTGGCCCTGCATTTACAAATGGCTTCATTCCCGAAGTGTAACTTCAGAAGATGAGGAAGAGCAAAAGCCTCAATGTCCAGTATGCAAATCAGAAGTTTCTCAATCATCTCTAGTTCCATTATATGGCCGTGGACAGACCACAATAGCTTCTGAAGGGAAGTCCCATCAAGTAGGATCTGTTATACCACAAAGACCCCGGGGTCCCAGATCATATACTTCTCAAAGTTATCATCCTCAGCAATTCAACTCAGTTCCAAACAGTTACACCTCACCAATGCTTAGCACAAGTGGTGGTTCACTACATAACACATTTGGCATCTTTGGTGAGATGATATATGCAGGGGTCTTTGGTAATCAGGTGGCAAACTTATATACATATAATCTTTCAGGGAACAACAGTAACCCAAGGATCAGAAGGCATTTTATGCAAGTTGATAAATCACTCAACAGAATCTGTTTTTTCCTCCTTTGCTGTCTTATTTCGTGTCTTCTCTTATTCTGA 699 0.4149 MALDQYLEETASQIDSFQEKPSLEKWKSSSNVIADSDKKASSGFDCNICLDSVQDPVVTLCGHLYCWPCIYKWLHSRSVTSEDEEEQKPQCPVCKSEVSQSSLVPLYGRGQTTIASEGKSHQVGSVIPQRPRGPRSYTSQSYHPQQFNSVPNSYTSPMLSTSGGSLHNTFGIFGEMIYAGVFGNQVANLYTYNLSGNNSNPRIRRHFMQVDKSLNRICFFLLCCLISCLLLF. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04592 232 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Seca3g04592 232 Pfam Zinc finger, C3HC4 type (RING finger) 46 94 IPR018957 GO:0046872
Seca3g04592 232 SUPERFAMILY RING/U-box 31 101 - -
Seca3g04592 232 SMART ring_2 46 94 IPR001841 -
Seca3g04592 232 MobiDBLite consensus disorder prediction 116 147 - -
Seca3g04592 232 MobiDBLite consensus disorder prediction 132 147 - -
Seca3g04592 232 ProSiteProfiles Zinc finger RING-type profile. 46 95 IPR001841 -
Seca3g04592 232 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 29 108 - -
Seca3g04592 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 108 IPR013083 -
Seca3g04592 232 CDD RING-HC_AtRMA-like 44 96 - -
Seca3g04592 232 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 230 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04592 Seca-Chr3 89760105 89760803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04592 44 232 C3H Transcription Factor Family AT4G28270 42.268 5.62e-47 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04592 K10666 - gmx:100807729 302.367