LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g04569	ATGGACACATCAAAGAAAAGTGGAAAATCCACCAAGGAGAGTGGTGATGACACTTCAAAGGTTAAAGGTGGAAGTGAAAGTCAAGATTGGGAGATGGAGAAGGGAAAGGGTCTTGATTTCAGCTCAGGGAGGCGGCAATGGAAGCCAGTTTTTGATGACATTTCCATGTCAGATAGACCTCTCAAGAAGATTCGTAGCCCTGAACGCCAAAACCCAAATCAACCATCCTCTGTTCCTCCTTCATCTAAAATACTCTTTCCTTTTGCTTTTGAAGCCTCTCAATCTCAAAATTCAATGCCATTCCCACACCAACCTCCAACCACAAATTTGCCTCCTTTTCATCCACCTCTTCAGCCAATACAACAAATCCATCACATGATATCTTTTGGGCCCCAGCAGAACATGGGGTATCCACCATTCTTAGCCCCAGATTCTGCTCTTCAGCATCATCAACAACAGCAACAGCTTCTTCAGTATTGGAGTGATGCACTGAATCTAAGTCCAAGGGGAAGGATGTTAGGACAAGAAGGAAGACCAATGTTAAGGCCCCCAACACAGCCTTTGAATGCTACAAAGCTCTATAGGGGAGTGAGACAACGCCATTGGGGCAAATGGGTTGCTGAGATTCGTCTCCCTCGCAATAGGACTCGTCTCTGGCTAGGCACCTTTGATACTGCTGAAGATGCTGCCATGGCATATGATCGCGAGGCTTTTAAGCTGAGAGGAGAGAATGCTAAGCTCAATTTCCCTGAGCTTTTCCTTAACAAGGATACAACATCAGCATCCACAACAGCTCAAACTTCTTCTTCCCCACATGAAGGTTCAACATCAACATTAAGCCAGAACACAAAGCAACCTGAAGTTGAAGTTGAACCAGTTCAAGAAGACCATAACAACAACATGCAGGCTCTCAATGATGAAAGCATGCAGCCACTAGCACCAATAACAGAAGAGAATGCTGAAACTGGGGAAGGCATTTCACAGTCTCAGGAATTGGTTTGGGGAGAAATGGCTGCTTGGTTCAATGCAATTCCTGCAGGTTGGGGACCAGGTAGCCCTATGTGGGATGATTTGGACCACAACAATAATCTTCTTTTGCAGTCACAGTTTCCTTTTCTGAATCCAAATCAACAAGAATTTCATGATGGTGATGCTGCTCAGAGACAAGAAGAAGATAACACAGGACCAGGTTCTTCCTCTTCCACTTGTCCCACCAGGCCTTTCTTCTGGAAGGGTCAAGATTGA	1245	0.4514	MDTSKKSGKSTKESGDDTSKVKGGSESQDWEMEKGKGLDFSSGRRQWKPVFDDISMSDRPLKKIRSPERQNPNQPSSVPPSSKILFPFAFEASQSQNSMPFPHQPPTTNLPPFHPPLQPIQQIHHMISFGPQQNMGYPPFLAPDSALQHHQQQQQLLQYWSDALNLSPRGRMLGQEGRPMLRPPTQPLNATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENAKLNFPELFLNKDTTSASTTAQTSSSPHEGSTSTLSQNTKQPEVEVEPVQEDHNNNMQALNDESMQPLAPITEENAETGEGISQSQELVWGEMAAWFNAIPAGWGPGSPMWDDLDHNNNLLLQSQFPFLNPNQQEFHDGDAAQRQEEDNTGPGSSSSTCPTRPFFWKGQD.	415

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g04569	414	MobiDBLite	consensus disorder prediction	259	288	-	-
	Seca3g04569	414	PRINTS	Ethylene responsive element binding protein signature	216	232	IPR001471	GO:0003700\|GO:0006355
	Seca3g04569	414	PRINTS	Ethylene responsive element binding protein signature	194	205	IPR001471	GO:0003700\|GO:0006355
	Seca3g04569	414	MobiDBLite	consensus disorder prediction	51	66	-	-
	Seca3g04569	414	MobiDBLite	consensus disorder prediction	259	293	-	-
	Seca3g04569	414	MobiDBLite	consensus disorder prediction	374	414	-	-
	Seca3g04569	414	Gene3D	AP2/ERF domain	193	251	IPR036955	GO:0003700\|GO:0006355
	Seca3g04569	414	FunFam	Ethylene-responsive transcription factor 2	192	251	-	-
	Seca3g04569	414	MobiDBLite	consensus disorder prediction	1	41	-	-
	Seca3g04569	414	SUPERFAMILY	DNA-binding domain	193	251	IPR016177	GO:0003677
	Seca3g04569	414	CDD	AP2	192	252	IPR001471	GO:0003700\|GO:0006355
	Seca3g04569	414	Pfam	AP2 domain	194	242	IPR001471	GO:0003700\|GO:0006355
	Seca3g04569	414	SMART	rav1_2	193	256	IPR001471	GO:0003700\|GO:0006355
	Seca3g04569	414	MobiDBLite	consensus disorder prediction	67	81	-	-
	Seca3g04569	414	MobiDBLite	consensus disorder prediction	1	82	-	-
	Seca3g04569	414	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	19	358	-	-
	Seca3g04569	414	MobiDBLite	consensus disorder prediction	391	408	-	-
	Seca3g04569	414	ProSiteProfiles	AP2/ERF domain profile.	193	250	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g04569	Seca-Chr3	89372101	89373399	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g04569	1	364	AP2-EREBP Transcription Factor Family	AT2G20880	43.767	4.78e-64	207

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Seca3g04569		AP2	2.7e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g04569	-		-	gmx:100811328	519.235