Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04554 ATGGAGACTGTTCTTTCCAAACACTCCCCACCTTCTGGCTTCAAGGGAGTGAACAAGGAGGAGGAGGAAGAATTGCTTGGGCAAATTGAAATATGGAAGTACATGTTAAGCTTCACCGATTCTGTTGCACTGAAATGTGTTGTCGAGCTGCGCATAGCTGACATAATAGACCGTTATGGTAAACCACTATCCTTGGCCCAAATTGCAGCAAACATTGAAGATGCACCCACTCCTGAACTTGCCCTGCTGCAAAGAGTCATGAGAGTAATGGTGCGCAGAAAGATCTTCAGTGCAGAGAAGTCAGAGAGCGGAGAGACACTTTATGGCATGACACGTGCTTCCACATGGATCTTAAGGGACACCAAAATGACCTTGGCACCCATGTTGTTGCTAGAGAACCACCCAATCCATTTGAACCCTGCTCACTACATTAGTGACTGTGTCAGAGAAGGTTACAAAAATGGCACTCCTTTCTTTAGGTGCCATGGTCATGATCAATTTGAAATGACTGGGTTGGACGCAGATTACAACAGGTTATTCAACGAGGGTATGGTTTGTACAGCCAGGATTGTGTCCAAGGCTGTGATCTCAGGATACAAAGATGGGTTCAACCAGATTGAATCATTGGTTGATGTAGGAGGTGGCATTGGAGGTTCACTCTCTGAGATTGTGAGAGCCTACCCACACATCAAAGGCATTAACTTTGACTTGCCTCATGTGGTTGCCACCGCACCCAAGTACGATGGAATCACCCATGTTGGAGGTGACATGTTCGTATCCATTCCTAATGCTGATGCTATTTACATGAAGTGGATTCTGCATGACTGGAGTGATGAACACTGCATTAGGATTTTAAAGAATTGTAGGAAGGCAATACCAGAGAAGACGGGAAAGGTGATCATTGTGGATCATGTTCTGGATCCAGAAGGGGATGAACCATTTACTGACACTGGTATTGCATTTGATATGATGCTGCTTGCACACAACTCTGGTGGGAAAGAAAGGACTGAGGAGAATTGGAAATACCTATTCAAAGAAACAGGATTCGTTCGTTATAACATCATCAAGATCAATGCCCTACCATCCATCATTGAGGCATTCCCAATCTAA 1110 0.4459 METVLSKHSPPSGFKGVNKEEEEELLGQIEIWKYMLSFTDSVALKCVVELRIADIIDRYGKPLSLAQIAANIEDAPTPELALLQRVMRVMVRRKIFSAEKSESGETLYGMTRASTWILRDTKMTLAPMLLLENHPIHLNPAHYISDCVREGYKNGTPFFRCHGHDQFEMTGLDADYNRLFNEGMVCTARIVSKAVISGYKDGFNQIESLVDVGGGIGGSLSEIVRAYPHIKGINFDLPHVVATAPKYDGITHVGGDMFVSIPNADAIYMKWILHDWSDEHCIRILKNCRKAIPEKTGKVIIVDHVLDPEGDEPFTDTGIAFDMMLLAHNSGGKERTEENWKYLFKETGFVRYNIIKINALPSIIEAFPI. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04554 369 PANTHER O-METHYLTRANSFERASE 31 351 IPR016461 GO:0008168
Seca3g04554 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 32 368 IPR016461 GO:0008168
Seca3g04554 369 PIRSF O-mtase 14 369 IPR016461 GO:0008168
Seca3g04554 369 Pfam O-methyltransferase domain 143 349 IPR001077 GO:0008171
Seca3g04554 369 SUPERFAMILY "Winged helix" DNA-binding domain 21 120 IPR036390 -
Seca3g04554 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 366 IPR029063 -
Seca3g04554 369 Gene3D - 15 117 IPR036388 -
Seca3g04554 369 CDD AdoMet_MTases 209 306 - -
Seca3g04554 369 Gene3D Vaccinia Virus protein VP39 119 369 IPR029063 -
Seca3g04554 369 FunFam O-methyltransferase family protein 119 367 - -
Seca3g04554 369 Pfam Dimerisation domain 43 91 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04554 Seca-Chr3 89085949 89095182 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04554 42 355 Monolignol Biosynthesis Gene Families AT5G54160 39.062 2.92e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04554 K22588 - gmx:100800801 654.825