Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04552 ATGTGTGCTATGCATGGATTACAGGAGATGAGTGTCTGGTCAGATGAGCGTGAAGACGAAGAAGAGGAAGCGCAGGACAGTGAAGGTTCAGAAGAAGAAGATGATGACTATGATGAAGAGGAGGACTATGTTGATGATGAAGAGCAAGATTGGGATTATTCAACTTTGTATGATGATGATGAGCACAATGAAGAGGACGAGGATGATGAAGAAAGAGAAGAAGACAGTGGTGACGATGTTGCATTAGAATCTGAGGTTGCAGTTGAAGGTATGAGTATAAATGATGTGGATGACATCCGTAAAATTGATTTGGTAAACATTACTTGGGAGAAGGTGGGTAGGTGTGTGTTTTCGGACTTGGAAGTTGCTTATCAATTCTATTGTAAATATGCAAGAAGAAAGGGTTTTGCTGTTCGAAAAGGAAAGGTGGTAAAGAACAGTAAAGGGGAAATTGTACAACGAACACTTTTTTGCAACAGGCAAGGGAAAAGAACAAGCTCAGGCACCAAAAAGCGTGAAGCAAAACCAGAAACTAGATGTGAATGCCTTGCATTGTTGTGCGTTCGAAAAGACTTAATGAGTGGGGGATGGTATGTGAAGATCTTCAATGATGATCACAATCATGACATGCTTGAAAACAAGTATTGTGGGATGATGCCAGCTCACCGAAAGATGACGGAATCTGATATAATGGAAATGAACAGTATGAGAAGTGTTGGGATATCTGTACCTGATATATATGCATCATTTGCTAGTCGTTGTGGTGGGTATGACAAGGTTGGTTTTCGCAAACAAGATATGTACAATCAGATTGACAAACAACGGCGGTTTCAAAGGTCTGATGCAAAATCTGTGCTAAGGTACCTACGTGAAATGAGAAGGCACGACCCGCTAATGTCTTACACACACACTGTTGATGAAGAAAGTAGGCTACAACATCTATTTTGGTGTGATGGTATTAGTAAGTTAAATTATGAACTTTTTGGTGATGTGCTAGCGTTTGATGCTACTTATGGGAGGAATAAATATAAGTGTCCATTAGTTATATTTTCTGGGGTCAACCATCACAACCGTACAACTGTATTTGCAAGTGCTATTATTTCGAATGAGACAGAAGACACATATGTTTGGCTACTCCAACAATTTAAAGCTGCAATGAAAGGGAAGTCACCGAAGGTAGTTATCACAGATGGTGATATGGCCATGAGGAATGCCATTAAAAGAGTCTTTCCAGGGGCACATCACCGACTATGTGCATGGCATTTGCTTCGGAATGCAACTTCAAATGTCGGCATCCCTGCGTTTCTTGAGGAGCTAGAAAGGTGTATGCTTGCTCATGTTGAAGTTGCTGAATTTTGCCGGCGGTGGAGAGACATGGTTTGTAAGTTTAAGTTAGAGGATAACAATTGGGTTAAAGATCTTTATGAGAAGAAGCATATGTGGGCCACGACATATATAACATGTCAATTTTTTGCGGGTTTGCGGACAACTTCCCGGTGTGAGAGTTTGCATGGTCAACTTGGAAGGTTTATAAAATCGCGATATAGCCTAACTGAATTTGTTCAACACTTCCAGCGGTCCCTTTGCTACATGAGGTATAAAGAAGAGGAGGATGATTTTGCATCTATGTTGGGTGAGGTTGTGTTAACAACAAACTTGCAGCCTTTGGAACGGTCCGCATCAAGGCACTTTACAAGGAAGATCTTCCTACTGTTTCGTAAAGTGTTATCTCGGGCTACCCAAAACTTTGTTGTCCATTGTAGGCAGTCAGCCATGTGGGTCATTTACACAGTTAAGAGGTATCAAAGTGGTGGAAAAGAATGGTATGTGTCACTGTACCCACCTTCAAATGATTTCAAATGTTCTTGCCAGCGAATGGAATCATATGGGTTACCGTGCCCACACATAATAGCTGTTTTGGTTTACCTTGACTATTCAGAGATTCCTACTTGTCTAATACTTGAAAGGTGGACCAAACGTGCTAAAGAATCCATCTGTCATATACTAATTGCAAGCTCTCACTATTGGGACTCATCCTTGATTGCCCGGTATGCATCCCTGCTAGAGCAATGCAGACAACTGTGTAACCTGGCTGCACGGTGTGATGAAGAGTTTAACCGTATTAAAGAGTGGATAACCTTTGAAATCCAACGGTTGAAAGATAAATATGGGGATGGTATTTTTGAGCAAGAGGGAGATTTGGATGGGCTGGACAGTGGTGTGCTTGATCCCGTTCGCGTTCGAACAAAAGGTTGCCCTCGTGCCTCTAGTAGTGTTCCTAGTAAAGGTAGGAGGAAAAACAAGTGCAGCAGGTGTGGCGGATTGGGGCATAATAAAAAATGTTGTCCTCAAACACCCATTGGAGAAACTTCTTGCACGGCTTGTGGGATGGGTGGTCAAGAACTGGCAAGTCAGAGTACATTTGATCTATATGTGGACTTGCATTGCGGCTCTCCTTTGATTGGGCTAAGTCAGGTGAACTATCAGAGTGGGGAAGGATGCAGTAATGCACGTGGATCTTGA 2523 0.4213 MCAMHGLQEMSVWSDEREDEEEEAQDSEGSEEEDDDYDEEEDYVDDEEQDWDYSTLYDDDEHNEEDEDDEEREEDSGDDVALESEVAVEGMSINDVDDIRKIDLVNITWEKVGRCVFSDLEVAYQFYCKYARRKGFAVRKGKVVKNSKGEIVQRTLFCNRQGKRTSSGTKKREAKPETRCECLALLCVRKDLMSGGWYVKIFNDDHNHDMLENKYCGMMPAHRKMTESDIMEMNSMRSVGISVPDIYASFASRCGGYDKVGFRKQDMYNQIDKQRRFQRSDAKSVLRYLREMRRHDPLMSYTHTVDEESRLQHLFWCDGISKLNYELFGDVLAFDATYGRNKYKCPLVIFSGVNHHNRTTVFASAIISNETEDTYVWLLQQFKAAMKGKSPKVVITDGDMAMRNAIKRVFPGAHHRLCAWHLLRNATSNVGIPAFLEELERCMLAHVEVAEFCRRWRDMVCKFKLEDNNWVKDLYEKKHMWATTYITCQFFAGLRTTSRCESLHGQLGRFIKSRYSLTEFVQHFQRSLCYMRYKEEEDDFASMLGEVVLTTNLQPLERSASRHFTRKIFLLFRKVLSRATQNFVVHCRQSAMWVIYTVKRYQSGGKEWYVSLYPPSNDFKCSCQRMESYGLPCPHIIAVLVYLDYSEIPTCLILERWTKRAKESICHILIASSHYWDSSLIARYASLLEQCRQLCNLAARCDEEFNRIKEWITFEIQRLKDKYGDGIFEQEGDLDGLDSGVLDPVRVRTKGCPRASSSVPSKGRRKNKCSRCGGLGHNKKCCPQTPIGETSCTACGMGGQELASQSTFDLYVDLHCGSPLIGLSQVNYQSGEGCSNARGS. 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04552 840 MobiDBLite consensus disorder prediction 1 81 - -
Seca3g04552 840 Pfam MULE transposase domain 331 425 IPR018289 -
Seca3g04552 840 Pfam FAR1 DNA-binding domain 125 211 IPR004330 -
Seca3g04552 840 Pfam SWIM zinc finger 620 642 IPR007527 GO:0008270
Seca3g04552 840 ProSiteProfiles Zinc finger CCHC-type profile. 768 784 IPR001878 GO:0003676|GO:0008270
Seca3g04552 840 SMART 26again6 619 646 IPR006564 GO:0008270
Seca3g04552 840 MobiDBLite consensus disorder prediction 14 81 - -
Seca3g04552 840 PANTHER OS01G0519700 PROTEIN 115 779 - -
Seca3g04552 840 ProSiteProfiles Zinc finger SWIM-type profile. 596 644 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04552 Seca-Chr3 89064824 89069147 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g04552 MULE 4.4e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04552 - - tpra:123913749 741.11