Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04541 ATGGGTTGTTGTGTCTCAACAAGCAGTAGAAGTACTTGTAGCAGCAGGAGCAATGGAGAGGTGCTCTCTCCATCTTGCTTAGAAATTGGATTCTGTGGGCAGAAGAGGGCAAGGAGAACATTCTCTGATCATGTTATTTCTCTGCACCATTTACCATCCTTACCCAGCAGAATTTTCACTAATGGAAAGAGCCGGTCTTCATGCATATTCACGCAGCAAGGCCGCAAGGGTATTAATCAGGACGCCATGGTTGTGTGGGAAGATTTCATGTCTGAAGATATGATCTTTTGTGGTGTCTTTGATGGTCATGGTCCACATGGTCATCTTGTTGCACGCAAAGTGAGGGATACATTGCCTGTAAAACTACTTTCATTTTTGCATTCTGGTGAATCGAAGCGAAAAGGGTCAGGTAAAGCTTGCTTCAAAGGGAATGTAAAACCTGACAGTGGAGACTCTGAGGATTGCTCTGCTGAGGAGAAACTGAACTCTAAATGGAGAGAAGCTTTCATGAAGGCATACAAGGCTATGGACAAAGAGCTCAGGTCTCATCCAAATCTGGATTGCTTCTGTAGCGGGAGCACAGCTGTGTCAATAGTGAAGCAGGGTTCAAACCTGTTCATGGGCAATATTGGGGATTCTCGAGCAATCATGGGATCCAAGGACAGCAATGACGCCATGGTGGCAGTTCAGTTGACTGTCGATTTGAAGCCTGATTTGCCAAGAGAAGCAGAAAGAATTAAGCGTTGCAAGGGTAGGGTATTTGCACTGCAAGATGAGCCAGAAGTGCCTAGGGTATGGTTGCCTTTTGATGATGCTCCAGGATTAGCAATGGCTAGAGCATTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCTATACCTGAATTTTCTCACCGGCTGCTTACAGACAGAGATCAGTTCATTGTTCTTGCCTCAGATGGGGTCTGGGATGTTTTAAGCAATGAGGAAGTGGTTGAGATAGTATCTTCAGCACCAACAAGATCATCAGCAGCTAGGATTCTGGTAGATTCTGCTGCTAGAGAGTGGAAACTTAAATACCCAACTTCAAAGATGGATGACTGTGCTGTAGTTTGCTTATTTTTGGATGGGAAAATGGACTCAGAATCTGATAATGAGGAACAAGGCTTTTCTTCTGCAACCATCCAGAGCAACCATTCAGGTAATCCAATTGAGTCAGATGATGGACAAAAATCTGAGCCATCTTTGCAAAGGAACTTCACTGTGAGATCCTCAGAAGAAAATGAGACTACTAATGGAGGAGCACTATCTGTTGATGTTGAAGATGGAACATCATCAGCTGATGATCAAAACTGGTCAGGTTTGGAAGGGGTCACCCGTGTAAACTCACTCGTCCAACTTCCTAGATTTTCTGAGGAAAGACCAAACTCTTGA 1416 0.4421 MGCCVSTSSRSTCSSRSNGEVLSPSCLEIGFCGQKRARRTFSDHVISLHHLPSLPSRIFTNGKSRSSCIFTQQGRKGINQDAMVVWEDFMSEDMIFCGVFDGHGPHGHLVARKVRDTLPVKLLSFLHSGESKRKGSGKACFKGNVKPDSGDSEDCSAEEKLNSKWREAFMKAYKAMDKELRSHPNLDCFCSGSTAVSIVKQGSNLFMGNIGDSRAIMGSKDSNDAMVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDVLSNEEVVEIVSSAPTRSSAARILVDSAAREWKLKYPTSKMDDCAVVCLFLDGKMDSESDNEEQGFSSATIQSNHSGNPIESDDGQKSEPSLQRNFTVRSSEENETTNGGALSVDVEDGTSSADDQNWSGLEGVTRVNSLVQLPRFSEERPNS. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04541 471 FunFam probable protein phosphatase 2C 52 57 372 - -
Seca3g04541 471 CDD PP2Cc 65 369 IPR001932 -
Seca3g04541 471 MobiDBLite consensus disorder prediction 1 20 - -
Seca3g04541 471 PANTHER PROTEIN PHOSPHATASE 65 367 IPR015655 GO:0004722|GO:0006470
Seca3g04541 471 SUPERFAMILY PP2C-like 57 371 IPR036457 -
Seca3g04541 471 SMART PP2C_4 55 367 IPR001932 -
Seca3g04541 471 Pfam Protein phosphatase 2C 96 346 IPR001932 -
Seca3g04541 471 Gene3D - 58 371 IPR036457 -
Seca3g04541 471 MobiDBLite consensus disorder prediction 377 449 - -
Seca3g04541 471 ProSiteProfiles PPM-type phosphatase domain profile. 66 369 IPR001932 -
Seca3g04541 471 MobiDBLite consensus disorder prediction 380 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04541 Seca-Chr3 88896386 88901502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04541 1 471 PP2C-type Phosphatase Gene Family AT1G03590 69.811 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04541 - - gmx:100798340 875.544