Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04492 ATGGAGGATCCACACAACTACAAGGATGATGAGTTAGTCTTAGGACACCGACTTTCTCAGTCAGCAAATAATCATATGGAACCTAAATTTCAGAATTTTACATCTGAGAGACAGGGTGATTCAATTTCTATTCCAATGAACAGTATATGTTGTCTTGGGAATGACACCAATATTTTGGGACACTGTAAATTGAATAAAAGAAGAACAGTTACAGAGGAAAATGGCAATGTTAATAGCTATTTTCAGCAAAATCAAGGTGCGAGTAGGGGGGAAAGGTCAGGGAAGTTTTCTTCTGTAAATGGAGGAAACAGGAATGGTTGGTTAGGTGACAAAAATTCTGTTAAAAATTTCCACTTATCTGGGGTGGTGGGAATGCGATATGATTCTTATAGTACAACCTGCCCAAGACATTGTGATCACAGAGCAAATCAAGCAACCAACTCTAAAATTTTGCATTTAGTTAATCCTCAGCTCCATAACATTCATAATGGGGATGCTAAAAGCTTGGCTACAAGAATATCCTCATTTCTGTGCTTGCATATTCCTGGAGTCATAAGCCCTCATGCTGAAGCCGTACATCTGTGGAACAGATTTTTTGTCATTGCTTGTTTAGTGGCAATTTTTGTTGATCCGTTGTTTTTCTTCATGCTATCAGCAATAAAGGATAGTAAATGCATAGTTATTGATTCAGCCACCAGTCCCACTACAATAGCAATTGTAATTTTTAGAAGCATGACCGATGTTATATACTTCTTGCACATACTTCTCCAGTTTAGGTTGGCTTTTGTGGCTCCTGAGTCTAGAGTGGTTGGTGCAGGAGAGGTGGTTGAGCATCCAAAAAAAATTGCACTCAATTACCTTAGTGGCTACTTTCTCATTGATATATTTAATGTAATTCCAGTTCCTCAGCAGATTATATTATTTATCCTACCAAAATTTTTTGGATCTTTTGAAGCTGGAGCTAATACTGAAAAAAATATCTTACGGATTTCTATTCTTATTCAATACCTTCCCAGACTGTGTAGGTTTCTTACTTTGCTTGCCAGGCAGACTCCAAGTGGCTTCATTTTTGAGTCAGCGTGGGGAAATTTCATTATCAATCTTCTAATTTATATGTTGTCTGCCCATGTTGTGGGTTCATGCTGGTATCTCTTCGGGTTACAGAGAGTTAACCAATGCCTTCGAGATGCTTGCCATAGCTCCAACTTAGAGTCATGCATGAGGTTCATAGATTGTGGAAATGGGAATGCTAGAGACAGTTTCCTTGTTGATCCAATGTGGAGTAGATGGATAAATGATGCCAATGGTAGTGCTTGTTTTCAAAAAGATGGTTTCCCATATGGAATTTATTCTGAAGCTGTTGGTCTTACCACTATAAATGATAGACCGTTTACTAAAAAATATGTCTATTCGTTGTTTTGGGGATTCCAGCAAATCAGCACTCTAGCTGGAAATCTAGTTCCAAGCAACTTCATTTGGGAGGTTCTTTTCACCATGGCTATTATTGGGCTAGGCCTTTTGCTCTTTGCTCTCCTCATAGGAAATATGCAGAACTTTCTTCAGGCTCTTGGACAGAGGAGATTGGAAATGTCATTAAGACAACGGGATTATGAGCAGTGGATGAGCCATCGATGCTTGCCAGAAGAACTAAGACGGCAAGTGAGGAACGCTGAACGGTACAACTGGGTTGCTACCAGAGGGGTAAATGAAGAAATGCTTTTGGAAAATCTGCCTGAAGAACTTCAAAGAGATATAAGACGCCATCTCTTCAAATTTGTGAAGAAGGTTCGGATATTTTCCATGATGGATGATCAAGTCATTGATGCTATTTGTGAGAGACTAAAGCTGAAGATATTCATTGAAGAAAGCAAAATTCTGTATCCTGGTGGTCCAATTGACAAGATGATTTTTATTATACGAGGAAAAGTGGAGAGCATTGAAGATAAAACTACAATTTGCTTATCTGAAGGGGATTTTTGTGGCGAGGAACTTCTCACATGGTGCCTAGAGCATTATTCAGTAAATAGAAGTACAGTCTCTAATGGGAGAAAAGTAAGGATTACAGGACAGAGACTGCTAAGCAACAGAACAGTTAGATGCTTAACTAATGTGGAAGCATTTGTACTTCAAGTTTCAGATCTTGAAGAGGTCACTAGTCTTTATGCTAGATTTTTGCGGAATCAACATGTTCAAGGAGCTATCAGGTATGAATCACCCTACTGGAGGGCTTTTGCAGCAAGATGCATTCAAGTAACATGGAGATACAACAGGAAACGTCGACAACGGGAACATGCTGAAACCATAGATAAAAGTTCGGTCAAACACAGACTTATCAAATACTAG 2343 0.3892 MEDPHNYKDDELVLGHRLSQSANNHMEPKFQNFTSERQGDSISIPMNSICCLGNDTNILGHCKLNKRRTVTEENGNVNSYFQQNQGASRGERSGKFSSVNGGNRNGWLGDKNSVKNFHLSGVVGMRYDSYSTTCPRHCDHRANQATNSKILHLVNPQLHNIHNGDAKSLATRISSFLCLHIPGVISPHAEAVHLWNRFFVIACLVAIFVDPLFFFMLSAIKDSKCIVIDSATSPTTIAIVIFRSMTDVIYFLHILLQFRLAFVAPESRVVGAGEVVEHPKKIALNYLSGYFLIDIFNVIPVPQQIILFILPKFFGSFEAGANTEKNILRISILIQYLPRLCRFLTLLARQTPSGFIFESAWGNFIINLLIYMLSAHVVGSCWYLFGLQRVNQCLRDACHSSNLESCMRFIDCGNGNARDSFLVDPMWSRWINDANGSACFQKDGFPYGIYSEAVGLTTINDRPFTKKYVYSLFWGFQQISTLAGNLVPSNFIWEVLFTMAIIGLGLLLFALLIGNMQNFLQALGQRRLEMSLRQRDYEQWMSHRCLPEELRRQVRNAERYNWVATRGVNEEMLLENLPEELQRDIRRHLFKFVKKVRIFSMMDDQVIDAICERLKLKIFIEESKILYPGGPIDKMIFIIRGKVESIEDKTTICLSEGDFCGEELLTWCLEHYSVNRSTVSNGRKVRITGQRLLSNRTVRCLTNVEAFVLQVSDLEEVTSLYARFLRNQHVQGAIRYESPYWRAFAARCIQVTWRYNRKRRQREHAETIDKSSVKHRLIKY. 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04492 780 Gene3D Helix hairpin bin 520 590 - -
Seca3g04492 780 ProSiteProfiles cAMP/cGMP binding motif profile. 598 665 IPR000595 -
Seca3g04492 780 CDD CAP_ED 598 726 IPR000595 -
Seca3g04492 780 Pfam Ion transport protein 194 526 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca3g04492 780 Gene3D Jelly Rolls 596 723 IPR014710 -
Seca3g04492 780 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 163 764 - -
Seca3g04492 780 MobiDBLite consensus disorder prediction 75 99 - -
Seca3g04492 780 SUPERFAMILY cAMP-binding domain-like 526 726 IPR018490 -
Seca3g04492 780 Gene3D - 193 519 - -
Seca3g04492 780 SUPERFAMILY Voltage-gated potassium channels 192 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04492 Seca-Chr3 88247110 88256678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04492 5 679 Ion Channels AT3G17700 52.381 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04492 K05391 - jre:109012085 899.427