Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04488 ATGGTGTTGCAACAAAATTTCTTCTGTAACAGGGAAGGCATACGTCTAGAGGATGGTGTCCCATTGGAGGAAAAACAACGTGAGCCGAAAGCTGTAACTAGATGTGGGTGCCGAGCAGAATTTCGGGCACATGTTGACATAAATACAGGGCGCTGGTATTGTTCTTACTTTTATGATAAGCATAATCATGAGTTGTTGGATCCAATATTTTGTTCAATGTTACCGGCACACCGGAAGATGACATCTAGTGATGTTAATCAGATGAACAATATGCTTAAAGTCGGCATTGGACCTCCTCAAATCTTTGAATCCTTTGCTAATCAGTGTGGGGGTTATGAAAACATAGGTTTCCGGAAGAAAGATATATATAACCAGATAAGTCAACAAAGGCGTATGCAACAGTCAGATGCCACAGAAGCAGTAAAGTTTTTGCGTGGGTTGGGGCAAAATGACCAGTCCATGTTTTTTAGACATACGACCAGTGAGGACGGTAGGTTGGAGCACTTGATATGGTGTGATGGTGTAATGCAACTGAATTACCAAGTGTTTGGGGAGGTGCTAGCATTCGATGCAACATATGGAAAGAACAAATACCGACTACCTCTTGTTGTTTTTTCTGGTATAAATCATCATAACAAAACAACAATCTTTGCTGCTGCTGTAGTTGCTAATGAAACTGAAGAAACCTATACATGGTTGTTGCGTCAGTTTCTGGAAGCCATGAAAGGAAAAATGCCTTCCTCAATCATTACAGATGGAGACCTTGCAATGAAAAACGCAATTAAATTTGTGTTTCCACGTGCCCCCCATCGGTTGTGTGCTTGGCATCTTACTAGGAATGCAATTGCCAACGTAGGAAAACCTGGTTTCACTGCTGACTTTGAGAGTTGTATGTTAGAAAACTATGAGGTTGGCAAGTTTCAAAGAAAATGGAATGAATTGGTTGTTAAATATGGTGTTGAAGATAAACCATGGATTAGGGACATGTATGAGAAGAGGGATATGTGGGCCACCGCTTACATGAGGGGGAAATTTTTTGCTGGGTTTAGGACAACCTCTAGGTGTGAAGGTTTGCATTCCGAATTGTCAAAGTTTGTGCACTCAAAACATAATCTCACTGACTTCTTACAACATTTCTTTCAATGTGTTGATCATATGCGGTTTAAGGAGATTGAAGATGACTTTGCATCAATACATGGTGATCCAGTGCTTCAAACTAGTCTCCATGATCTTGAAGAGTCAGCTGCAAAGTTTTTAACTAGGGAGGTGTTTTTCCTATTTCGCCCTGTGCTTGAAAAGGCAGCCATGATGTCTGTGATTGGCTGTAAGGAGTTGTACTGTAGTTATGTGTACACAATTCGCAATCGCTGGGGTTTAGGGAAGGAATGGAGTGTCTCATATAATCCGTCATGTGGTGAATATAAATGCCAATGCATGTGGTTTGAATCACATGGACTACCATGTCCACATATAGTTGTTGTTTTGTGTCATCTGGACATCAAAGAGCTTCCTAATTCTGTTCTGCTTCGCAGATGGACGAAGGGTGCAAAAGACATGGTGAATGTGAGTAGTGGTCAATCATCTGCTGGTTGGGATTCACAGAAAGTTTTTAGGGTTGAGGACTTAAATTTCCTGTATAGGAAATTATTAGTTGTAAATGGTGATACAGTTGAAGACTATTATGACACTCGTGAGAAACTACTGGAGGAATATGAAATGAAGAAGGCAAAGAAAGCACAACAAAGGGTTGCAGGTTCTTAA 1761 0.4066 MVLQQNFFCNREGIRLEDGVPLEEKQREPKAVTRCGCRAEFRAHVDINTGRWYCSYFYDKHNHELLDPIFCSMLPAHRKMTSSDVNQMNNMLKVGIGPPQIFESFANQCGGYENIGFRKKDIYNQISQQRRMQQSDATEAVKFLRGLGQNDQSMFFRHTTSEDGRLEHLIWCDGVMQLNYQVFGEVLAFDATYGKNKYRLPLVVFSGINHHNKTTIFAAAVVANETEETYTWLLRQFLEAMKGKMPSSIITDGDLAMKNAIKFVFPRAPHRLCAWHLTRNAIANVGKPGFTADFESCMLENYEVGKFQRKWNELVVKYGVEDKPWIRDMYEKRDMWATAYMRGKFFAGFRTTSRCEGLHSELSKFVHSKHNLTDFLQHFFQCVDHMRFKEIEDDFASIHGDPVLQTSLHDLEESAAKFLTREVFFLFRPVLEKAAMMSVIGCKELYCSYVYTIRNRWGLGKEWSVSYNPSCGEYKCQCMWFESHGLPCPHIVVVLCHLDIKELPNSVLLRRWTKGAKDMVNVSSGQSSAGWDSQKVFRVEDLNFLYRKLLVVNGDTVEDYYDTREKLLEEYEMKKAKKAQQRVAGS. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04488 586 ProSiteProfiles Zinc finger SWIM-type profile. 463 499 IPR007527 GO:0008270
Seca3g04488 586 SMART 26again6 474 501 IPR006564 GO:0008270
Seca3g04488 586 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 5 573 IPR031052 GO:0006355
Seca3g04488 586 Pfam FAR1 DNA-binding domain 3 66 IPR004330 -
Seca3g04488 586 Pfam MULE transposase domain 186 280 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04488 Seca-Chr3 88190962 88194507 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g04488 MULE 9.7e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04488 - - tpra:123913749 662.914