Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04479 ATGGTTATGGGCAGAACCCTGTTCTTCTTGGTTTTCTGCCTGTGGATTCCCTTGGAAGTAGTGGGGAGGACAGGACCTTCACCTACCACCATGAATTCTACTGTTTCTTCAAGAGGGAAGGTTGTGAAATTTGGAGCCCTGTTTACTTTTGATTCTGTCATTGGAAGATCAGCTAAACCTGCAATTCTGGCTGCCGTTGATGATGTCAATTCTAATACCAGCATCCTCCCTGGCATTGAACTCCAAGTTATTTTACATGATACAAATTGCAGTGGCTTTCTTGGAACAGTGGAAGCTCTACAGTTGATGGAGAATGATGTGGTAGCTGTTGTTGGTCCACAGTCATCTGGAACGGCTCATATCATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCATTTGGGGCAACTGACCCTACTCTATCTGCTCTGCAATACCCATATTTTATCCGCACTACTCAGAGTGATTATCATCAGATGTTTGCAATTGCAGACCTTGTTGAGTATTACAGATGGAGGGAGGTAATTGCCATTTATGTAGATGATGATAATGGAAGGAATGGAATTTCTGTATTGGGTGATGCCTTGTCAAAGAATCGTGCCAAGATTTCTTACAAGGCTGCCTTCCCTTCTGGAGCCACAAAAAGTTATATCAGTGACTTGTTAAATGAAGTAAACTTAATGGAATCACGGGTCTATGTTCTGCATGCTAATCCTGATTCTGGTTTAGCAATCTTCTCTATTGCCAAGAAGCTACGAATGATGGGAAATGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCAGTGCTGGATTCATTAGAGCCAGGTGACACTGACACAATGAATCTTTTACAAGGGGTTGTGGCTTTTCGTAATCACATTCCTGATACTGATCTCAAAAGGGGTTTTATCTCCAGGTTGAAAAGCCTAAAAGACAAGGAGACTGCAAACTTCAATTCATATGCATTTTATGCATATGATTCTGTTTGGTTGGCAGCTCGTGCCCTTGATGCTTATCTTAATGAAGGTGGAAATATATCTTTCTCCAATGACCCTAGGTTGCAAGACACACAAGGAAGCATGTTGCATTTAGCAGCACTTCGTACTTTTGATGGCGGTCCACAATTTCTCCAGACAATTTTGAGAATGAACTTCACTGGTCTAAGTGGTCAAATTCAGTTTGACATGGACAGAAATTTAATTCATCCTGCATATGATATTCTTAATATTGGTGGTACTAAATCCCGTGGAATTGGTTATTGGTCTAATCACTCTGGTCTTTCAGTTATAGCTCCTGAAATTTTATATATGAAAAATTCATCTAAAACCTCCTCAACGAGCAGTCAACAACTGCACAATGTGACATGGCCTGGAGAGGCTAAAACTATACCAAGGGGATGGGTATTTCCCAACAATGGAAAGCCACTGCGTATAGCAGTCCCAAACCGAGTAAGCTACAAGGAGTTTGTAGCTAAAGACAACAAGCCCCCATGGGTACAAGGTTATTGCATTGATATCTTTGAATCAGCCTTAAAATTATTGCCTTATCCTGTCCCACGAGAATATATATTATATGGAAATGGTGAAAGGAATCCTAGCTACAACGAGCTCGTGGAACAGGTTGCACAAAATAACTTTGATGCAGCAGTTGGAGATGTTACAATTGTCACAAATAGGACAAGAATTGTGGATTTTACTCAACCTTTTATGCAATCAGGGCTTGTTATTGTTGTTCCTGTCAAGGAGGAGAAATCAAACCCTTGGTCTTTCCTTGAGCCATTCACTATGCAAATGTGGTGTGTCACTGGTGTTTTCTTTCTTTTCGTGGGAACTGTTGTGTGGATTCTTGAGCACAGGTTCAATCATGAGTTCCGAGGTCCACCAAGGAAACAACTTATAACAGTCTTTTGGTTCAGTTTGTCAACAATGTTTTTCTCACACAGTATGTACCCTATACATTCTCTCATTCACGCCTCTTCAATTTTCACATCTGGCTCAGGAGAGAACACTGTGAGTACTCTTGGGCGTTTGGTGCTAATCATATGGCTATTTGTGGTGTTAATTATCAATTCAAGCTACACAGCTAGCTTGACATCCATCCTCACTGTGCAGCAACTGTCCACACAAATTGAAGGAATTGACAGCTTGATATCAAGTACTCAACCGATTGGAATTCAAGATGGGTCATTTGCACGGAAGTATCTGATAGATGAACTCAATATAGCAGAATCTAGGATAGTTACTTTGAAAAACATGCAGGATTACATTGATGCCCTTCAGCGTGGCCCAAGAGGTGGAGGGGTTGCAGCAATTGTTGATGAGCTTCCTTATATTGAGATCTTGATGTCCAGCTCCAAATGTAAGTTTACAACGGTTGGAGAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACTGCTGTTCTTCGGCTCTCTGAGAATGGGGACATGCAAAAGATTCATGACAAATGGCTTAATATAAAGGGGTGTGCAACCAATGACATTGATGCAAACAAACTATCTCTTACAAGCTTCTGGGGCCTCTTTCTTATATGTGGAATTACATGTGCCCTTGCCCTGATCATATTCTTTGCTAGAGTGTTCTGTCAATATAACAAGTTCAACCTACAGCCTAAAGAGGTTGATGTGGAAATTCAACCAGTCAGGTCCAGAAGGACAAGCAGAACTGCTAGCTTCAAGCACTTGATTAATTTTGTAGATAAAAGGGAAGCAGAAATCAAAGATATACTTAGGCAGAATAAAAAAAGGAGACACAACCAGAGCTTAGACTTGCAATCCAATTCACCAAGCTAA 2856 0.4114 MVMGRTLFFLVFCLWIPLEVVGRTGPSPTTMNSTVSSRGKVVKFGALFTFDSVIGRSAKPAILAAVDDVNSNTSILPGIELQVILHDTNCSGFLGTVEALQLMENDVVAVVGPQSSGTAHIISHVVNELHVPLLSFGATDPTLSALQYPYFIRTTQSDYHQMFAIADLVEYYRWREVIAIYVDDDNGRNGISVLGDALSKNRAKISYKAAFPSGATKSYISDLLNEVNLMESRVYVLHANPDSGLAIFSIAKKLRMMGNGYVWIATDWLPSVLDSLEPGDTDTMNLLQGVVAFRNHIPDTDLKRGFISRLKSLKDKETANFNSYAFYAYDSVWLAARALDAYLNEGGNISFSNDPRLQDTQGSMLHLAALRTFDGGPQFLQTILRMNFTGLSGQIQFDMDRNLIHPAYDILNIGGTKSRGIGYWSNHSGLSVIAPEILYMKNSSKTSSTSSQQLHNVTWPGEAKTIPRGWVFPNNGKPLRIAVPNRVSYKEFVAKDNKPPWVQGYCIDIFESALKLLPYPVPREYILYGNGERNPSYNELVEQVAQNNFDAAVGDVTIVTNRTRIVDFTQPFMQSGLVIVVPVKEEKSNPWSFLEPFTMQMWCVTGVFFLFVGTVVWILEHRFNHEFRGPPRKQLITVFWFSLSTMFFSHSMYPIHSLIHASSIFTSGSGENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSTQIEGIDSLISSTQPIGIQDGSFARKYLIDELNIAESRIVTLKNMQDYIDALQRGPRGGGVAAIVDELPYIEILMSSSKCKFTTVGEEFTKSGWGFAFQRDSPLAVDLSTAVLRLSENGDMQKIHDKWLNIKGCATNDIDANKLSLTSFWGLFLICGITCALALIIFFARVFCQYNKFNLQPKEVDVEIQPVRSRRTSRTASFKHLINFVDKREAEIKDILRQNKKRRHNQSLDLQSNSPS. 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04479 951 PIRSF IGluLR_plant 1 950 IPR017103 -
Seca3g04479 951 Pfam Bacterial extracellular solute-binding proteins, family 3 534 840 IPR001638 -
Seca3g04479 951 CDD PBP1_GABAb_receptor_plant 43 432 IPR044440 -
Seca3g04479 951 Gene3D - 157 430 - -
Seca3g04479 951 Gene3D - 61 405 - -
Seca3g04479 951 SUPERFAMILY Periplasmic binding protein-like I 37 471 IPR028082 -
Seca3g04479 951 Gene3D - 474 589 - -
Seca3g04479 951 Gene3D - 590 730 - -
Seca3g04479 951 Gene3D - 731 842 - -
Seca3g04479 951 FunFam Glutamate receptor 474 590 - -
Seca3g04479 951 FunFam Glutamate receptor 157 316 - -
Seca3g04479 951 CDD GluR_Plant 477 839 - -
Seca3g04479 951 FunFam Glutamate receptor 735 843 - -
Seca3g04479 951 Pfam Receptor family ligand binding region 59 414 IPR001828 -
Seca3g04479 951 FunFam Glutamate receptor 590 739 - -
Seca3g04479 951 SUPERFAMILY Periplasmic binding protein-like II 457 839 - -
Seca3g04479 951 SMART GluR_14 480 841 IPR001320 GO:0015276|GO:0016020
Seca3g04479 951 Pfam Ligand-gated ion channel 841 869 IPR001320 GO:0015276|GO:0016020
Seca3g04479 951 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 55 71 - -
Seca3g04479 951 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 115 143 - -
Seca3g04479 951 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 246 269 - -
Seca3g04479 951 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 913 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04479 Seca-Chr3 88068025 88073692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04479 38 806 Ion Channels AT1G05200 65.800 0.0 1074
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04479 K05387 - gmx:100802782 1524.22